AT4G39850 (CTS, ACN2, PED3, AtABCD1, PXA1)

Aliases : CTS, ACN2, PED3, AtABCD1, PXA1

Description : peroxisomal ABC transporter 1

Gene families : OG0003180 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003180_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G39850

Target	Alias	Description	ECC score	Gene Family Method
Adi_g020091	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.05	OrthoFinder output from all 47 species
Aev_g11144	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.04	OrthoFinder output from all 47 species
Als_g30641	CTS, ACN2, PED3,...	not classified & original description: none	0.11	OrthoFinder output from all 47 species
Als_g56890	CTS, ACN2, PED3,...	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g03612	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene62794.t1	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0048.g030599	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: CDS=293-4504	0.09	OrthoFinder output from all 47 species
Ceric.01G050100.1	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description:...	0.04	OrthoFinder output from all 47 species
Dcu_g08997	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.06	OrthoFinder output from all 47 species
LOC_Os01g73530.2	CTS, ACN2, PED3,...	peroxisomal fatty acid transporter (PXA1). subfamily...	0.05	OrthoFinder output from all 47 species
Len_g16771	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g02451	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.06	OrthoFinder output from all 47 species
MA_10427189g0010	CTS, ACN2, PED3,...	ABC transporter D family member 1 OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
MA_10435403g0010	CTS, ACN2, PED3,...	peroxisomal fatty acid transporter (PXA1). subfamily...	0.09	OrthoFinder output from all 47 species
MA_10437109g0030	CTS, ACN2, PED3,...	subfamily ABCD transporter	0.06	OrthoFinder output from all 47 species
MA_526197g0010	CTS, ACN2, PED3,...	ABC transporter D family member 1 OS=Arabidopsis...	0.09	OrthoFinder output from all 47 species
Mp6g16850.1	CTS, ACN2, PED3,...	peroxisomal fatty acid transporter (PXA1). subfamily...	0.03	OrthoFinder output from all 47 species
Ppi_g05350	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0138.g022570	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: CDS=217-4257	0.03	OrthoFinder output from all 47 species
Sam_g36184	No alias	subfamily ABCD transporter & original description: none	0.03	OrthoFinder output from all 47 species
Smo439220	CTS, ACN2, PED3,...	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
Solyc04g055120.3.1	CTS, ACN2, PED3,...	peroxisomal fatty acid transporter (PXA1). subfamily...	0.09	OrthoFinder output from all 47 species
Zm00001e018534_P001	CTS, ACN2, PED3,...	peroxisomal fatty acid transporter (PXA1). subfamily...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005777	peroxisome	IDA	Interproscan
CC	GO:0005778	peroxisomal membrane	None	Extended
CC	GO:0005886	plasma membrane	ISM	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006631	fatty acid metabolic process	None	Extended
BP	GO:0006635	fatty acid beta-oxidation	IMP	Interproscan
BP	GO:0006635	fatty acid beta-oxidation	RCA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006862	nucleotide transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007031	peroxisome organization	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009062	fatty acid catabolic process	None	Extended
BP	GO:0009404	toxin metabolic process	None	Extended
BP	GO:0009407	toxin catabolic process	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010029	regulation of seed germination	None	Extended
BP	GO:0010030	positive regulation of seed germination	IMP	Interproscan
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
BP	GO:0015748	organophosphate ester transport	None	Extended
BP	GO:0015865	purine nucleotide transport	None	Extended
BP	GO:0015868	purine ribonucleotide transport	None	Extended
BP	GO:0015916	fatty-acyl-CoA transport	IMP	Interproscan
BP	GO:0015931	nucleobase-containing compound transport	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016042	lipid catabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016054	organic acid catabolic process	None	Extended
BP	GO:0019395	fatty acid oxidation	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019748	secondary metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0030258	lipid modification	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031903	microbody membrane	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0034440	lipid oxidation	None	Extended
BP	GO:0035966	response to topologically incorrect protein	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0042579	microbody	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	ISS	Interproscan
BP	GO:0042886	amide transport	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043248	proteasome assembly	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044242	cellular lipid catabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0046395	carboxylic acid catabolic process	None	Extended
CC	GO:0046861	glyoxysomal membrane	IDA	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048582	positive regulation of post-embryonic development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051094	positive regulation of developmental process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051240	positive regulation of multicellular organismal process	None	Extended
BP	GO:0051503	adenine nucleotide transport	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051788	response to misfolded protein	RCA	Interproscan
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072329	monocarboxylic acid catabolic process	None	Extended
BP	GO:0072348	sulfur compound transport	None	Extended
BP	GO:0080129	proteasome core complex assembly	RCA	Interproscan
CC	GO:0098588	bounding membrane of organelle	None	Extended
BP	GO:0098754	detoxification	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1900140	regulation of seedling development	None	Extended
BP	GO:1901264	carbohydrate derivative transport	None	Extended
BP	GO:1901337	thioester transport	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0009411	response to UV	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0009962	regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0010048	vernalization response	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0043473	pigmentation	IEP	HCCA
BP	GO:0043476	pigment accumulation	IEP	HCCA
BP	GO:0043478	pigment accumulation in response to UV light	IEP	HCCA
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0043480	pigment accumulation in tissues	IEP	HCCA
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0048437	floral organ development	IEP	HCCA
BP	GO:0048440	carpel development	IEP	HCCA
BP	GO:0048827	phyllome development	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	465	610
IPR011527	ABC1_TM_dom	93	361
IPR011527	ABC1_TM_dom	747	1012
IPR003439	ABC_transporter-like_ATP-bd	1115	1280

External Links

No external refs found!

AT4G39850 (CTS, ACN2, PED3, AtABCD1, PXA1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation