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AT4G37950


Description : Rhamnogalacturonate lyase family protein


Gene families : OG0001248 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001248_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G37950
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AT1G09880 No alias Rhamnogalacturonate lyase family protein 0.05 OrthoFinder output from all 47 species
Dcu_g18808 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01006298001 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc05g051350.2.1 Solyc05g051350 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc11g011290.3.1 Solyc11g011290 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Zm00001e013992_P006 Zm00001e013992 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
MF GO:0016829 lyase activity ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0046910 pectinesterase inhibitor activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR029411 RG-lyase_III 482 672
IPR010325 Rhamnogal_lyase 33 244
IPR029413 RG-lyase_II 398 468
No external refs found!