AT4G37660

Description : Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein

Gene families : OG0000926 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000926_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G37660

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00062p00098880	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Als_g22832	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g01020	No alias	not classified & original description: none	0.15	OrthoFinder output from all 47 species
Aop_g03383	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0331.g065406	No alias	not classified & original description: CDS=1-612	0.11	OrthoFinder output from all 47 species
Cre06.g293700	No alias	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Dac_g05009	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g01856	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Gb_26365	No alias	component mtRPL7/L12 of large ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species
LOC_Os07g43310.1	LOC_Os07g43310	component mtRPL7/L12 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Lfl_g03909	No alias	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Lfl_g35843	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_137800g0010	No alias	component mtRPL7/L12 of large ribosomal subunit proteome	0.12	OrthoFinder output from all 47 species
Pir_g12392	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g16390	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g18974	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo49023	No alias	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
Solyc02g088760.2.1	Solyc02g088760	component mtRPL7/L12 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Solyc02g092300.1.1	Solyc02g092300	component mtRPL7/L12 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Solyc09g010030.3.1	Solyc09g010030	component mtRPL7/L12 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Spa_g09129	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g09130	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e012092_P001	Zm00001e012092	component mtRPL7/L12 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Zm00001e026468_P001	Zm00001e026468	component mtRPL7/L12 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Zm00001e035594_P001	Zm00001e035594	component mtRPL7/L12 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006354	DNA-templated transcription elongation	RCA	Interproscan
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	ISS	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000314	organellar small ribosomal subunit	IEP	HCCA
CC	GO:0005763	mitochondrial small ribosomal subunit	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
CC	GO:0098798	mitochondrial protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013823	Ribosomal_L7/L12_C	100	166

External Links

No external refs found!

AT4G37660

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation