AT4G35740 (RecQl3, ATRECQ3)

Aliases : RecQl3, ATRECQ3

Description : DEAD/DEAH box RNA helicase family protein

Gene families : OG0000844 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G35740
Cluster	HCCA: Cluster_86

Target	Alias	Description	ECC score	Gene Family Method
Aop_g11868	RECQI1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cre01.g004651	No alias	No description available	0.02	OrthoFinder output from all 47 species
Dac_g16350	RecQl3, ATRECQ3	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g19620	MED34, ATRECQ2, RECQL2	component *(MED34) of MEDIATOR transcription...	0.04	OrthoFinder output from all 47 species
LOC_Os02g54020.1	RecQl3, ATRECQ3,...	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Sam_g25246	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc07g042010.4.1	RecQl3, ATRECQ3,...	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e016051_P001	RecQl3, ATRECQ3,...	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003678	DNA helicase activity	None	Extended
MF	GO:0003697	single-stranded DNA binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006310	DNA recombination	IDA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0009378	four-way junction helicase activity	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0036310	ATP-dependent DNA/DNA annealing activity	IDA	Interproscan
MF	GO:0043138	3'-5' DNA helicase activity	IDA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140666	annealing activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
MF	GO:1990814	DNA/DNA annealing activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003923	GPI-anchor transamidase activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	HCCA
BP	GO:0006473	protein acetylation	IEP	HCCA
BP	GO:0006475	internal protein amino acid acetylation	IEP	HCCA
BP	GO:0006643	membrane lipid metabolic process	IEP	HCCA
BP	GO:0006665	sphingolipid metabolic process	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0016125	sterol metabolic process	IEP	HCCA
BP	GO:0016126	sterol biosynthetic process	IEP	HCCA
BP	GO:0016573	histone acetylation	IEP	HCCA
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	HCCA
BP	GO:0018394	peptidyl-lysine acetylation	IEP	HCCA
BP	GO:0030148	sphingolipid biosynthetic process	IEP	HCCA
BP	GO:0043543	protein acylation	IEP	HCCA
BP	GO:0043966	histone H3 acetylation	IEP	HCCA
BP	GO:0043967	histone H4 acetylation	IEP	HCCA
BP	GO:0046467	membrane lipid biosynthetic process	IEP	HCCA
BP	GO:0046519	sphingoid metabolic process	IEP	HCCA
BP	GO:0046520	sphingoid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	41	207
IPR032284	RecQ_Zn-bd	364	428
IPR001650	Helicase_C	258	349

External Links

No external refs found!

AT4G35740 (RecQl3, ATRECQ3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation