AT4G34470 (SK12, ASK12)

Aliases : SK12, ASK12

Description : SKP1-like 12

Gene families : OG0000379 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000379_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G34470

Target	Alias	Description	ECC score	Gene Family Method
AT2G03170	ASK14, SK14	SKP1-like 14	0.13	OrthoFinder output from all 47 species
AT2G03190	ASK16, SK16	SKP1-like 16	0.06	OrthoFinder output from all 47 species
AT2G20160	MEO, ASK17	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	0.07	OrthoFinder output from all 47 species
AT2G25700	ASK3, SK3	SKP1-like 3	0.07	OrthoFinder output from all 47 species
AT3G21830	SK8, ASK8	SKP1-like 8	0.05	OrthoFinder output from all 47 species
AT3G21840	ASK7, SK7	SKP1-like 7	0.04	OrthoFinder output from all 47 species
AT3G21860	ASK10, SK10	SKP1-like 10	0.04	OrthoFinder output from all 47 species
AT3G60020	SK5, ASK5	SKP1-like 5	0.04	OrthoFinder output from all 47 species
Azfi_s0003.g007582	No alias	not classified & original description: CDS=203-667	0.02	OrthoFinder output from all 47 species
Cba_g38923	No alias	ASK-type linker component of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Ceric.20G070900.1	ASK1, ATSKP1,...	ASK-type linker component of SCF E3 ubiquitin ligase...	0.05	OrthoFinder output from all 47 species
Ceric.20G071200.1	ASK1, ATSKP1,...	ASK-type linker component of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Ceric.20G071800.1	ASK1, ATSKP1,...	ASK-type linker component of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Ceric.20G072300.1	ASK2, SKP1B,...	ASK-type linker component of SCF E3 ubiquitin ligase...	0.04	OrthoFinder output from all 47 species
Dac_g41160	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os07g05150.1	ASK2, SKP1B,...	target protein binding component SKP1/ASK1 of...	0.1	OrthoFinder output from all 47 species
LOC_Os07g05160.1	ASK4, SK4, LOC_Os07g05160	target protein binding component SKP1/ASK1 of...	0.08	OrthoFinder output from all 47 species
LOC_Os07g05180.1	ASK2, SKP1B,...	target protein binding component SKP1/ASK1 of...	0.11	OrthoFinder output from all 47 species
LOC_Os07g43270.1	ASK1, ATSKP1,...	target protein binding component SKP1/ASK1 of...	0.11	OrthoFinder output from all 47 species
LOC_Os08g28800.1	ASK1, ATSKP1,...	target protein binding component SKP1/ASK1 of...	0.04	OrthoFinder output from all 47 species
LOC_Os08g28820.1	ASK1, ATSKP1,...	target protein binding component SKP1/ASK1 of...	0.12	OrthoFinder output from all 47 species
LOC_Os09g10270.1	ASK4, SK4, LOC_Os09g10270	target protein binding component SKP1/ASK1 of...	0.05	OrthoFinder output from all 47 species
MA_99195g0010	ASK2, SKP1B	target protein binding component SKP1/ASK1 of...	0.03	OrthoFinder output from all 47 species
Ppi_g09622	ASK2, SKP1B	ASK-type linker component of SCF E3 ubiquitin ligase...	0.07	OrthoFinder output from all 47 species
Smo98727	ASK1, ATSKP1,...	Protein degradation.peptide tagging.Ubiquitin...	0.04	OrthoFinder output from all 47 species
Solyc03g112710.1.1	ASK2, SKP1B,...	target protein binding component SKP1/ASK1 of...	0.03	OrthoFinder output from all 47 species
Solyc11g008230.1.1	ASK11, SK11,...	target protein binding component SKP1/ASK1 of...	0.03	OrthoFinder output from all 47 species
Solyc11g008240.1.1	ASK11, SK11,...	target protein binding component SKP1/ASK1 of...	0.03	OrthoFinder output from all 47 species
Zm00001e011287_P001	ASK2, SKP1B,...	target protein binding component SKP1/ASK1 of...	0.02	OrthoFinder output from all 47 species
Zm00001e011288_P001	ASK2, SKP1B,...	target protein binding component SKP1/ASK1 of...	0.02	OrthoFinder output from all 47 species
Zm00001e020534_P002	ASK2, SKP1B,...	target protein binding component SKP1/ASK1 of...	0.02	OrthoFinder output from all 47 species
Zm00001e042493_P001	ASK2, SKP1B,...	target protein binding component SKP1/ASK1 of...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	ISS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
MF	GO:0060089	molecular transducer activity	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR016072	Skp1_comp_dimer	103	150
IPR016073	Skp1_comp_POZ	4	64

External Links

No external refs found!

AT4G34470 (SK12, ASK12)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation