AT4G30220 (RUXF)

Aliases : RUXF

Description : small nuclear ribonucleoprotein F

Gene families : OG0002787 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002787_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G30220
Cluster	HCCA: Cluster_4

Target	Alias	Description	ECC score	Gene Family Method
Adi_g019037	No alias	component *(LSm6) of U6-associated LSm accessory...	0.03	OrthoFinder output from all 47 species
Adi_g129920	No alias	component *(LSm6) of U6-associated LSm accessory...	0.02	OrthoFinder output from all 47 species
Als_g63045	RUXF	component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory...	0.03	OrthoFinder output from all 47 species
Aop_g28357	RUXF	component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory...	0.05	OrthoFinder output from all 47 species
Azfi_s0045.g029874	No alias	component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory...	0.03	OrthoFinder output from all 47 species
Azfi_s0061.g034914	No alias	component *(LSm6) of U6-associated LSm accessory...	0.04	OrthoFinder output from all 47 species
Ceric.1Z177500.1	Ceric.1Z177500	component *(LSm6) of U6-associated LSm accessory...	0.07	OrthoFinder output from all 47 species
Ceric.27G002400.1	RUXF, Ceric.27G002400	component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory...	0.11	OrthoFinder output from all 47 species
Ceric.36G038500.1	RUXF, Ceric.36G038500	component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000944.19	No alias	RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm...	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001355.5	No alias	RNA processing.RNA splicing.U6-associated LSm accessory...	0.02	OrthoFinder output from all 47 species
Cre03.g151750	No alias	RNA processing.RNA splicing.U6-associated LSm accessory...	0.06	OrthoFinder output from all 47 species
Cre05.g241300	No alias	RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm...	0.06	OrthoFinder output from all 47 species
Dcu_g15755	No alias	component *(LSm6) of U6-associated LSm accessory...	0.03	OrthoFinder output from all 47 species
GSVIVT01003994001	No alias	RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm...	0.16	OrthoFinder output from all 47 species
LOC_Os02g08090.1	LOC_Os02g08090	component Sm-F of U1/U2/U4/U5-associated Sm accessory...	0.03	OrthoFinder output from all 47 species
LOC_Os11g43620.1	LOC_Os11g43620	component Sm-F of U1/U2/U4/U5-associated Sm accessory...	0.06	OrthoFinder output from all 47 species
MA_26016g0010	RUXF	component Sm-F of U1/U2/U4/U5-associated Sm accessory...	0.07	OrthoFinder output from all 47 species
Mp6g01610.1	No alias	component Sm-F of U1/U2/U4/U5-associated Sm accessory...	0.03	OrthoFinder output from all 47 species
Msp_g27535	RUXF	component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory...	0.05	OrthoFinder output from all 47 species
Pp3c12_17630V3.1	RUXF, Pp3c12_17630	small nuclear ribonucleoprotein F	0.03	OrthoFinder output from all 47 species
Pp3c18_1280V3.1	Pp3c18_1280	Small nuclear ribonucleoprotein family protein	0.02	OrthoFinder output from all 47 species
Pp3c4_14270V3.1	RUXF, Pp3c4_14270	small nuclear ribonucleoprotein F	0.02	OrthoFinder output from all 47 species
Smo228181	RUXF	RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm...	0.09	OrthoFinder output from all 47 species
Smo268399	No alias	RNA processing.RNA splicing.U6-associated LSm accessory...	0.15	OrthoFinder output from all 47 species
Solyc10g078450.2.1	Solyc10g078450	component LSm6 of U6-associated LSm accessory...	0.03	OrthoFinder output from all 47 species
Zm00001e025108_P001	RUXF, Zm00001e025108	component Sm-F of U1/U2/U4/U5-associated Sm accessory...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	ISS	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0004550	nucleoside diphosphate kinase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	HCCA
BP	GO:0016925	protein sumoylation	IEP	HCCA
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001163	LSM_dom_euk/arc	11	73

External Links

No external refs found!

AT4G30220 (RUXF)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation