AT4G30160 (VLN4, ATVLN4)

Aliases : VLN4, ATVLN4

Description : villin 4

Gene families : OG0000479 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000479_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G30160

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00025p00248490	ATVLN2, VLN2,...	Cytoskeleton.microfilament network.actin...	0.04	OrthoFinder output from all 47 species
Aev_g02570	VLN4, ATVLN4	villin actin-crosslinking factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g02593	VLN4, ATVLN4	villin actin-crosslinking factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g12394	ATVLN2, VLN2	villin actin-crosslinking factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g12863	VLN4, ATVLN4	villin actin-crosslinking factor & original description: none	0.06	OrthoFinder output from all 47 species
Aob_g40168	VLN4, ATVLN4	villin actin-crosslinking factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene30355.t1	ATVLN3, VLN3,...	villin actin-crosslinking factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene30356.t1	VLN4, ATVLN4,...	villin actin-crosslinking factor & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0277.g061478	ATVLN3, VLN3	villin actin-crosslinking factor & original description:...	0.06	OrthoFinder output from all 47 species
Cba_g64699	ATVLN2, VLN2	villin actin-crosslinking factor & original description: none	0.03	OrthoFinder output from all 47 species
Cre12.g524400	VLN4, ATVLN4	No description available	0.02	OrthoFinder output from all 47 species
Ehy_g17376	VLN4, ATVLN4	villin actin-crosslinking factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01029237001	VLN4, ATVLN4	Cytoskeleton.microfilament network.actin...	0.03	OrthoFinder output from all 47 species
GSVIVT01033261001	ATVLN2, VLN2	Cytoskeleton.microfilament network.actin...	0.12	OrthoFinder output from all 47 species
Gb_23115	VLN4, ATVLN4	villin actin-crosslinking factor	0.03	OrthoFinder output from all 47 species
Gb_25295	VLN4, ATVLN4	villin actin-crosslinking factor	0.04	OrthoFinder output from all 47 species
LOC_Os06g44890.1	VLN4, ATVLN4,...	villin actin-crosslinking factor	0.03	OrthoFinder output from all 47 species
Lfl_g04963	VLN4, ATVLN4	villin actin-crosslinking factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g07820	ATVLN2, VLN2	villin actin-crosslinking factor & original description: none	0.09	OrthoFinder output from all 47 species
MA_10429481g0030	VLN4, ATVLN4	villin actin-crosslinking factor	0.03	OrthoFinder output from all 47 species
Mp1g24640.1	ATVLN3, VLN3	villin actin-crosslinking factor	0.03	OrthoFinder output from all 47 species
Ore_g05024	ATVLN2, VLN2	villin actin-crosslinking factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g09807	VLN4, ATVLN4	villin actin-crosslinking factor & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g27621	VLN4, ATVLN4	villin actin-crosslinking factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002599	VLN4, ATVLN4	villin actin-crosslinking factor & original description:...	0.03	OrthoFinder output from all 47 species
Sam_g12531	No alias	villin actin-crosslinking factor & original description: none	0.04	OrthoFinder output from all 47 species
Solyc04g015830.3.1	ATVLN2, VLN2,...	villin actin-crosslinking factor	0.06	OrthoFinder output from all 47 species
Spa_g17550	ATVLN2, VLN2	villin actin-crosslinking factor & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g03521	VLN4, ATVLN4	villin acTin-crosslinking factor & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g05651	ATVLN2, VLN2	villin acTin-crosslinking factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e010507_P006	VLN4, ATVLN4,...	villin actin-crosslinking factor	0.05	OrthoFinder output from all 47 species
Zm00001e028314_P001	ATVLN2, VLN2,...	villin actin-crosslinking factor	0.09	OrthoFinder output from all 47 species
Zm00001e037689_P003	VLN4, ATVLN4,...	villin actin-crosslinking factor	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003779	actin binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005884	actin filament	IDA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	ISS	Interproscan
BP	GO:0007015	actin filament organization	IMP	Interproscan
MF	GO:0008092	cytoskeletal protein binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008154	actin polymerization or depolymerization	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0016482	cytosolic transport	IMP	Interproscan
BP	GO:0022411	cellular component disassembly	None	Extended
BP	GO:0030029	actin filament-based process	None	Extended
BP	GO:0030042	actin filament depolymerization	IDA	Interproscan
BP	GO:0032984	protein-containing complex disassembly	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048767	root hair elongation	IMP	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051014	actin filament severing	IDA	Interproscan
MF	GO:0051015	actin filament binding	IPI	Interproscan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051261	protein depolymerization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051764	actin crosslink formation	IPI	Interproscan
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
BP	GO:0097435	supramolecular fiber organization	None	Extended
CC	GO:0099080	supramolecular complex	None	Extended
CC	GO:0099081	supramolecular polymer	None	Extended
CC	GO:0099512	supramolecular fiber	None	Extended
CC	GO:0099513	polymeric cytoskeletal fiber	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
BP	GO:0000059	obsolete protein import into nucleus, docking	IEP	HCCA
CC	GO:0000145	exocyst	IEP	HCCA
BP	GO:0001676	long-chain fatty acid metabolic process	IEP	HCCA
BP	GO:0002213	defense response to insect	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004559	alpha-mannosidase activity	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0005770	late endosome	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
CC	GO:0005802	trans-Golgi network	IEP	HCCA
BP	GO:0006007	glucose catabolic process	IEP	HCCA
BP	GO:0006366	transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006405	RNA export from nucleus	IEP	HCCA
BP	GO:0006409	tRNA export from nucleus	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006897	endocytosis	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0007032	endosome organization	IEP	HCCA
BP	GO:0007033	vacuole organization	IEP	HCCA
MF	GO:0008022	protein C-terminus binding	IEP	HCCA
MF	GO:0008420	RNA polymerase II CTD heptapeptide repeat phosphatase activity	IEP	HCCA
MF	GO:0008565	obsolete protein transporter activity	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009660	amyloplast organization	IEP	HCCA
BP	GO:0009787	regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009788	negative regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009846	pollen germination	IEP	HCCA
BP	GO:0009959	negative gravitropism	IEP	HCCA
BP	GO:0009968	negative regulation of signal transduction	IEP	HCCA
BP	GO:0010191	mucilage metabolic process	IEP	HCCA
BP	GO:0010192	mucilage biosynthetic process	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
BP	GO:0010393	galacturonan metabolic process	IEP	HCCA
BP	GO:0010648	negative regulation of cell communication	IEP	HCCA
MF	GO:0015923	mannosidase activity	IEP	HCCA
BP	GO:0016050	vesicle organization	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0016926	protein desumoylation	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0019320	hexose catabolic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0023057	negative regulation of signaling	IEP	HCCA
BP	GO:0030048	actin filament-based movement	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
CC	GO:0031984	organelle subcompartment	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0034406	cell wall beta-glucan metabolic process	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0045488	pectin metabolic process	IEP	HCCA
BP	GO:0046365	monosaccharide catabolic process	IEP	HCCA
BP	GO:0048354	mucilage biosynthetic process involved in seed coat development	IEP	HCCA
BP	GO:0048359	mucilage metabolic process involved in seed coat development	IEP	HCCA
BP	GO:0050657	nucleic acid transport	IEP	HCCA
BP	GO:0050658	RNA transport	IEP	HCCA
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	HCCA
BP	GO:0051031	tRNA transport	IEP	HCCA
BP	GO:0051168	nuclear export	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0051236	establishment of RNA localization	IEP	HCCA
BP	GO:0051301	cell division	IEP	HCCA
BP	GO:0051645	Golgi localization	IEP	HCCA
BP	GO:0051646	mitochondrion localization	IEP	HCCA
BP	GO:0052541	plant-type cell wall cellulose metabolic process	IEP	HCCA
BP	GO:0052546	cell wall pectin metabolic process	IEP	HCCA
BP	GO:0060151	peroxisome localization	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0072593	reactive oxygen species metabolic process	IEP	HCCA
BP	GO:0097064	ncRNA export from nucleus	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:1901419	regulation of response to alcohol	IEP	HCCA
BP	GO:1901420	negative regulation of response to alcohol	IEP	HCCA
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	HCCA
BP	GO:1905957	regulation of cellular response to alcohol	IEP	HCCA
BP	GO:1905958	negative regulation of cellular response to alcohol	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007123	Gelsolin-like_dom	638	711
IPR007123	Gelsolin-like_dom	150	217
IPR007123	Gelsolin-like_dom	267	333
IPR007123	Gelsolin-like_dom	29	111
IPR003128	Villin_headpiece	939	974

External Links

No external refs found!

AT4G30160 (VLN4, ATVLN4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation