1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT4G29980

AT4G29980


Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: Fasciclin-like arabinogalactan family protein (TAIR:AT1G30800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).


Gene families : OG0001815 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001815_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G29980
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00130p00053270 FLA20,... No description available 0.04 OrthoFinder output from all 47 species
AT5G06920 FLA21 FASCICLIN-like arabinogalactan protein 21 precursor 0.03 OrthoFinder output from all 47 species
Aspi01Gene24305.t1 Aspi01Gene24305 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene70725.t1 Aspi01Gene70725 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G009800.1 Ceric.02G009800 not classified & original description: pacid=50584637... 0.06 OrthoFinder output from all 47 species
Ceric.11G050800.1 Ceric.11G050800 not classified & original description: pacid=50596503... 0.03 OrthoFinder output from all 47 species
Ceric.19G016700.1 Ceric.19G016700 not classified & original description: pacid=50575888... 0.03 OrthoFinder output from all 47 species
Ceric.23G000500.1 Ceric.23G000500 not classified & original description: pacid=50611562... 0.02 OrthoFinder output from all 47 species
Ceric.27G033900.1 Ceric.27G033900 not classified & original description: pacid=50606120... 0.03 OrthoFinder output from all 47 species
Ceric.34G054200.1 Ceric.34G054200 not classified & original description: pacid=50623109... 0.04 OrthoFinder output from all 47 species
Dcu_g42902 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g42961 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g43111 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g50627 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g48590 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g10194 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g54179 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g54460 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g56881 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g59265 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10437029g0030 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_153279g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp1g16270.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g24430 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g39432 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g39475 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g41571 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g41822 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42638 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g42728 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g43220 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g43221 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g43271 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43272 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g03841 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04573 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36002 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g40299 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc05g008320.1.1 FLA20, Solyc05g008320 fasciclin-type arabinogalactan protein 0.09 OrthoFinder output from all 47 species
Solyc11g072680.1.1 Solyc11g072680 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Spa_g38490 FLA21 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g46225 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g47560 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g49061 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g44448 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g46034 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0019499 cyanide metabolic process IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
BP GO:0046202 cyanide biosynthetic process IEP HCCA
BP GO:0048654 anther morphogenesis IEP HCCA
BP GO:0048658 anther wall tapetum development IEP HCCA
BP GO:0055046 microgametogenesis IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA

No InterPro domains available for this sequence

No external refs found!