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  5. AT4G29730

AT4G29730 (NFC5, MSI5)


Aliases : NFC5, MSI5

Description : nucleosome/chromatin assembly factor group C5


Gene families : OG0004797 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004797_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G29730

Target Alias Description ECC score Gene Family Method Actions
Adi_g078795 NFC04, MSI4,... flowering time factor *(FVE) & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000194.75 NFC04, MSI4,... WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os01g51300.1 NFC04, MSI4,... component CAF1c/MSI of CAF1 histone chaperone complex 0.03 OrthoFinder output from all 47 species
Lfl_g03908 NFC04, MSI4,... flowering time factor *(FVE) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000419 RNA polymerase V complex IEP HCCA
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004407 histone deacetylase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
CC GO:0005665 RNA polymerase II, core complex IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0009954 proximal/distal pattern formation IEP HCCA
BP GO:0009955 adaxial/abaxial pattern specification IEP HCCA
BP GO:0010016 shoot system morphogenesis IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010053 root epidermal cell differentiation IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010073 meristem maintenance IEP HCCA
BP GO:0010305 leaf vascular tissue pattern formation IEP HCCA
BP GO:0010431 seed maturation IEP HCCA
BP GO:0010589 leaf proximal/distal pattern formation IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
MF GO:0019213 deacetylase activity IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
BP GO:0030856 regulation of epithelial cell differentiation IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
MF GO:0033558 protein lysine deacetylase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0035195 miRNA-mediated gene silencing IEP HCCA
MF GO:0035197 siRNA binding IEP HCCA
MF GO:0035198 miRNA binding IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0045604 regulation of epidermal cell differentiation IEP HCCA
BP GO:0045682 regulation of epidermis development IEP HCCA
BP GO:0048439 flower morphogenesis IEP HCCA
BP GO:0048468 cell development IEP HCCA
BP GO:0048830 adventitious root development IEP HCCA
BP GO:0048864 stem cell development IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
MF GO:0061980 regulatory RNA binding IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
BP GO:0090627 plant epidermal cell differentiation IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR022052 Histone-bd_RBBP4_N 56 121
IPR001680 WD40_repeat 356 395
IPR001680 WD40_repeat 196 228
IPR001680 WD40_repeat 266 301
IPR001680 WD40_repeat 314 346
No external refs found!