AT4G29170 (ATMND1)

Aliases : ATMND1

Description : Mnd1 family protein

Gene families : OG0006869 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006869_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G29170

Target	Alias	Description	ECC score	Gene Family Method
Ceric.09G025300.1	ATMND1, Ceric.09G025300	component *(MND1) of HOP2-MND1 presynaptic filament...	0.03	OrthoFinder output from all 47 species
Lfl_g29811	ATMND1	component *(MND1) of HOP2-MND1 presynaptic filament...	0.02	OrthoFinder output from all 47 species
Ore_g02355	ATMND1	component *(MND1) of HOP2-MND1 presynaptic filament...	0.02	OrthoFinder output from all 47 species
Sam_g06211	No alias	component *(MND1) of HOP2-MND1 presynaptic filament...	0.02	OrthoFinder output from all 47 species
Tin_g00642	ATMND1	component *(MND1) of HOP2-MND1 presynaptic filament...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000278	mitotic cell cycle	RCA	Interproscan
BP	GO:0000724	double-strand break repair via homologous recombination	RCA	Interproscan
BP	GO:0000725	recombinational repair	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	None	Extended
BP	GO:0006261	DNA-templated DNA replication	RCA	Interproscan
BP	GO:0006275	regulation of DNA replication	RCA	Interproscan
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006302	double-strand break repair	IMP	Interproscan
BP	GO:0006302	double-strand break repair	RCA	Interproscan
BP	GO:0006304	DNA modification	None	Extended
BP	GO:0006305	DNA alkylation	None	Extended
BP	GO:0006306	DNA methylation	RCA	Interproscan
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006312	mitotic recombination	RCA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007049	cell cycle	None	Extended
BP	GO:0007059	chromosome segregation	None	Extended
BP	GO:0007062	sister chromatid cohesion	RCA	Interproscan
BP	GO:0007129	homologous chromosome pairing at meiosis	RCA	Interproscan
BP	GO:0007131	reciprocal meiotic recombination	RCA	Interproscan
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009553	embryo sac development	IMP	Interproscan
BP	GO:0009555	pollen development	IMP	Interproscan
BP	GO:0009555	pollen development	RCA	Interproscan
BP	GO:0009560	embryo sac egg cell differentiation	RCA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010212	response to ionizing radiation	IMP	Interproscan
BP	GO:0010212	response to ionizing radiation	RCA	Interproscan
BP	GO:0010332	response to gamma radiation	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016444	somatic cell DNA recombination	RCA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0031047	RNA-mediated gene silencing	RCA	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042138	meiotic DNA double-strand break formation	RCA	Interproscan
BP	GO:0042991	obsolete transcription factor import into nucleus	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043687	post-translational protein modification	RCA	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044728	DNA methylation or demethylation	None	Extended
BP	GO:0045132	meiotic chromosome segregation	RCA	Interproscan
BP	GO:0045893	positive regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0051726	regulation of cell cycle	RCA	Interproscan
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061982	meiosis I cell cycle process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
BP	GO:0098813	nuclear chromosome segregation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140527	reciprocal homologous recombination	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000314	organellar small ribosomal subunit	IEP	HCCA
BP	GO:0000491	small nucleolar ribonucleoprotein complex assembly	IEP	HCCA
BP	GO:0002376	immune system process	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004810	CCA tRNA nucleotidyltransferase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA
CC	GO:0005763	mitochondrial small ribosomal subunit	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006955	immune response	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
MF	GO:0010427	abscisic acid binding	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0019840	isoprenoid binding	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
MF	GO:0031406	carboxylic acid binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
MF	GO:0033293	monocarboxylic acid binding	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0042562	hormone binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0043177	organic acid binding	IEP	HCCA
MF	GO:0043178	alcohol binding	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
MF	GO:0070567	cytidylyltransferase activity	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1905393	plant organ formation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR040453	Mnd1_HTH	16	74

External Links

No external refs found!

AT4G29170 (ATMND1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation