AT4G28890

Description : RING/U-box superfamily protein

Gene families : OG0002999 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002999_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G28890

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00242060	ATL43,...	Protein degradation.peptide tagging.Ubiquitin...	0.04	OrthoFinder output from all 47 species
AT5G05810	ATL43	RING/U-box superfamily protein	0.04	OrthoFinder output from all 47 species
Ala_g04243	ATL43	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Aop_g26807	ATL43	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene18266.t1	Aspi01Gene18266	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.05	OrthoFinder output from all 47 species
Ceric.02G098900.1	Ceric.02G098900	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.04	OrthoFinder output from all 47 species
GSVIVT01029257001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	OrthoFinder output from all 47 species
Gb_13077	ATL43	RING-H2-class E3 ligase	0.03	OrthoFinder output from all 47 species
LOC_Os05g51780.1	LOC_Os05g51780	RING-H2-class E3 ligase	0.03	OrthoFinder output from all 47 species
MA_35091g0010	No alias	RING-H2-class E3 ligase	0.03	OrthoFinder output from all 47 species
Pir_g36297	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g42516	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Pir_g49281	ATL43	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Pnu_g30629	ATL43	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Ppi_g30667	ATL43	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003504	ATL43	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017194	ATL43	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Solyc05g018310.1.1	Solyc05g018310	RING-H2-class E3 ligase	0.08	OrthoFinder output from all 47 species
Solyc12g007320.1.1	Solyc12g007320	RING-H2-class E3 ligase	0.1	OrthoFinder output from all 47 species
Zm00001e032612_P001	Zm00001e032612	RING-H2-class E3 ligase	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	monoatomic ion transport	None	Extended
BP	GO:0006812	monoatomic cation transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010053	root epidermal cell differentiation	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0016567	protein ubiquitination	IDA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0021700	developmental maturation	None	Extended
BP	GO:0030001	metal ion transport	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0040007	growth	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048364	root development	None	Extended
BP	GO:0048469	cell maturation	None	Extended
BP	GO:0048527	lateral root development	RCA	Interproscan
BP	GO:0048528	post-embryonic root development	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	RCA	Interproscan
BP	GO:0048764	trichoblast maturation	None	Extended
BP	GO:0048765	root hair cell differentiation	RCA	Interproscan
BP	GO:0048767	root hair elongation	RCA	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090627	plant epidermal cell differentiation	None	Extended
BP	GO:0090696	post-embryonic plant organ development	None	Extended
BP	GO:0099402	plant organ development	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0002020	protease binding	IEP	HCCA
MF	GO:0004033	aldo-keto reductase (NADP) activity	IEP	HCCA
MF	GO:0005242	inward rectifier potassium channel activity	IEP	HCCA
MF	GO:0005244	voltage-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0005249	voltage-gated potassium channel activity	IEP	HCCA
MF	GO:0005267	potassium channel activity	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
BP	GO:0006694	steroid biosynthetic process	IEP	HCCA
BP	GO:0006826	iron ion transport	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0007154	cell communication	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
BP	GO:0008202	steroid metabolic process	IEP	HCCA
MF	GO:0008417	fucosyltransferase activity	IEP	HCCA
MF	GO:0008422	beta-glucosidase activity	IEP	HCCA
BP	GO:0009267	cellular response to starvation	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009608	response to symbiont	IEP	HCCA
BP	GO:0009610	response to symbiotic fungus	IEP	HCCA
BP	GO:0009734	auxin-activated signaling pathway	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0009991	response to extracellular stimulus	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010106	cellular response to iron ion starvation	IEP	HCCA
BP	GO:0010167	response to nitrate	IEP	HCCA
CC	GO:0010168	ER body	IEP	HCCA
BP	GO:0010345	suberin biosynthetic process	IEP	HCCA
BP	GO:0010359	regulation of anion channel activity	IEP	HCCA
MF	GO:0015276	ligand-gated monoatomic ion channel activity	IEP	HCCA
BP	GO:0015698	inorganic anion transport	IEP	HCCA
BP	GO:0015706	nitrate transmembrane transport	IEP	HCCA
MF	GO:0015926	glucosidase activity	IEP	HCCA
MF	GO:0015928	fucosidase activity	IEP	HCCA
BP	GO:0016128	phytosteroid metabolic process	IEP	HCCA
BP	GO:0016129	phytosteroid biosynthetic process	IEP	HCCA
BP	GO:0016131	brassinosteroid metabolic process	IEP	HCCA
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0022832	voltage-gated channel activity	IEP	HCCA
MF	GO:0022834	ligand-gated channel activity	IEP	HCCA
MF	GO:0022843	voltage-gated monoatomic cation channel activity	IEP	HCCA
BP	GO:0022898	regulation of transmembrane transporter activity	IEP	HCCA
MF	GO:0030551	cyclic nucleotide binding	IEP	HCCA
BP	GO:0031667	response to nutrient levels	IEP	HCCA
BP	GO:0031668	cellular response to extracellular stimulus	IEP	HCCA
BP	GO:0031669	cellular response to nutrient levels	IEP	HCCA
BP	GO:0032409	regulation of transporter activity	IEP	HCCA
BP	GO:0032412	regulation of monoatomic ion transmembrane transporter activity	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0042445	hormone metabolic process	IEP	HCCA
BP	GO:0042594	response to starvation	IEP	HCCA
BP	GO:0044070	regulation of monoatomic anion transport	IEP	HCCA
BP	GO:0045489	pectin biosynthetic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
MF	GO:0050284	sinapate 1-glucosyltransferase activity	IEP	HCCA
MF	GO:0050734	hydroxycinnamoyltransferase activity	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0052325	cell wall pectin biosynthetic process	IEP	HCCA
BP	GO:0052546	cell wall pectin metabolic process	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
BP	GO:0070417	cellular response to cold	IEP	HCCA
BP	GO:0071496	cellular response to external stimulus	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0080022	primary root development	IEP	HCCA
MF	GO:0080044	quercetin 7-O-glucosyltransferase activity	IEP	HCCA
MF	GO:0080045	quercetin 3'-O-glucosyltransferase activity	IEP	HCCA
BP	GO:0080119	ER body organization	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098661	inorganic anion transmembrane transport	IEP	HCCA
MF	GO:0099094	ligand-gated monoatomic cation channel activity	IEP	HCCA
BP	GO:1901698	response to nitrogen compound	IEP	HCCA
BP	GO:1901700	response to oxygen-containing compound	IEP	HCCA
BP	GO:1902025	nitrate import	IEP	HCCA
BP	GO:1903959	regulation of monoatomic anion transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	122	165

External Links

No external refs found!

AT4G28890

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation