1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT4G27420

AT4G27420


Description : ABC-2 type transporter family protein


Gene families : OG0000438 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000438_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G27420
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Cre17.g717050 No alias ABC transporter G family member 21 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
GSVIVT01034463001 ABCG25, ATABCG25 Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Gb_38402 ABCG14 subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
MA_4863g0010 ABCG26, WBC27 sporopollenin precursor exporter. subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Sam_g35119 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
CC GO:0005886 plasma membrane IPI Interproscan
BP GO:0010222 stem vascular tissue pattern formation IGI Interproscan
BP GO:0010588 cotyledon vascular tissue pattern formation IMP Interproscan
BP GO:0010588 cotyledon vascular tissue pattern formation IGI Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity ISS Interproscan
MF GO:0042803 protein homodimerization activity IPI Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0000976 transcription cis-regulatory region binding IEP HCCA
MF GO:0000987 cis-regulatory region sequence-specific DNA binding IEP HCCA
MF GO:0001067 transcription regulatory region nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004484 mRNA guanylyltransferase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006370 7-methylguanosine mRNA capping IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0009734 auxin-activated signaling pathway IEP HCCA
BP GO:0010208 pollen wall assembly IEP HCCA
BP GO:0010214 seed coat development IEP HCCA
BP GO:0010927 cellular component assembly involved in morphogenesis IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0032504 multicellular organism reproduction IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
BP GO:0048830 adventitious root development IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0052386 cell wall thickening IEP HCCA
BP GO:0052543 callose deposition in cell wall IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 67 220
IPR013525 ABC_2_trans 369 573
No external refs found!