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  5. AT4G26288

AT4G26288


Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: oxidative stress 3 (TAIR:AT5G56550.1); Has 289 Blast hits to 232 proteins in 41 species: Archae - 0; Bacteria - 12; Metazoa - 36; Fungi - 21; Plants - 151; Viruses - 2; Other Eukaryotes - 67 (source: NCBI BLink).


Gene families : OG0000658 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000658_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G26288
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
Ala_g33660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0454.g071295 No alias not classified & original description: CDS=242-1225 0.02 OrthoFinder output from all 47 species
Cba_g10604 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20813 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g52240 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g74855 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G023800.1 Ceric.02G023800 not classified & original description: pacid=50585135... 0.02 OrthoFinder output from all 47 species
Ceric.35G029100.1 Ceric.35G029100 not classified & original description: pacid=50581359... 0.03 OrthoFinder output from all 47 species
Ceric.36G040300.1 Ceric.36G040300 not classified & original description: pacid=50568176... 0.03 OrthoFinder output from all 47 species
Ehy_g08962 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01015083001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01023830001 No alias No description available 0.04 OrthoFinder output from all 47 species
LOC_Os08g35630.1 LOC_Os08g35630 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_49645g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp4g19370.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Ore_g04271 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0092.g018962 No alias not classified & original description: CDS=559-1476 0.03 OrthoFinder output from all 47 species
Sam_g26773 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo444788 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc07g041830.4.1 Solyc07g041830 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Solyc08g061490.3.1 Solyc08g061490 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g07516 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g30230 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e010099_P002 Zm00001e010099 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e014432_P001 ATOXS3, OXS3,... no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e015455_P001 ATOXS3, OXS3,... no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003863 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity IEP HCCA
MF GO:0003868 4-hydroxyphenylpyruvate dioxygenase activity IEP HCCA
MF GO:0004028 3-chloroallyl aldehyde dehydrogenase activity IEP HCCA
MF GO:0004075 biotin carboxylase activity IEP HCCA
MF GO:0004089 carbonate dehydratase activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004411 homogentisate 1,2-dioxygenase activity IEP HCCA
MF GO:0004485 methylcrotonoyl-CoA carboxylase activity IEP HCCA
MF GO:0005275 amine transmembrane transporter activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005740 mitochondrial envelope IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006551 leucine metabolic process IEP HCCA
BP GO:0006552 leucine catabolic process IEP HCCA
BP GO:0006558 L-phenylalanine metabolic process IEP HCCA
BP GO:0006559 L-phenylalanine catabolic process IEP HCCA
BP GO:0006570 tyrosine metabolic process IEP HCCA
BP GO:0006572 tyrosine catabolic process IEP HCCA
BP GO:0006775 fat-soluble vitamin metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006787 porphyrin-containing compound catabolic process IEP HCCA
BP GO:0007568 aging IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009081 branched-chain amino acid metabolic process IEP HCCA
BP GO:0009083 branched-chain amino acid catabolic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009642 response to light intensity IEP HCCA
BP GO:0009646 response to absence of light IEP HCCA
BP GO:0009743 response to carbohydrate IEP HCCA
BP GO:0009744 response to sucrose IEP HCCA
BP GO:0009746 response to hexose IEP HCCA
BP GO:0009750 response to fructose IEP HCCA
BP GO:0009991 response to extracellular stimulus IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010189 vitamin E biosynthetic process IEP HCCA
BP GO:0010236 plastoquinone biosynthetic process IEP HCCA
BP GO:0015976 carbon utilization IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015996 chlorophyll catabolic process IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
MF GO:0016421 CoA carboxylase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0019336 phenol-containing compound catabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0031667 response to nutrient levels IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033015 tetrapyrrole catabolic process IEP HCCA
BP GO:0034284 response to monosaccharide IEP HCCA
BP GO:0034285 response to disaccharide IEP HCCA
BP GO:0042180 cellular ketone metabolic process IEP HCCA
BP GO:0042181 ketone biosynthetic process IEP HCCA
BP GO:0042360 vitamin E metabolic process IEP HCCA
BP GO:0042362 fat-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0042991 obsolete transcription factor import into nucleus IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043617 cellular response to sucrose starvation IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046149 pigment catabolic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
MF GO:0050897 cobalt ion binding IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901616 organic hydroxy compound catabolic process IEP HCCA
BP GO:1901661 quinone metabolic process IEP HCCA
BP GO:1901663 quinone biosynthetic process IEP HCCA
BP GO:1901700 response to oxygen-containing compound IEP HCCA
BP GO:1901999 homogentisate metabolic process IEP HCCA
BP GO:1902000 homogentisate catabolic process IEP HCCA
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP HCCA
BP GO:1902222 erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!