AT4G25740

Description : RNA binding Plectin/S10 domain-containing protein

Gene families : OG0001341 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001341_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G25740

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00250710	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.2	OrthoFinder output from all 47 species
AMTR_s00017p00221160	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.2	OrthoFinder output from all 47 species
Adi_g025624	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Adi_g071847	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Adi_g075195	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Aev_g11070	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ala_g38517	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Als_g18631	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Als_g63989	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aop_g18378	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Aop_g25175	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.16	OrthoFinder output from all 47 species
Aop_g31056	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Aop_g37205	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Aop_g68055	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Aspi01Gene15502.t1	Aspi01Gene15502	component *(eS10) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aspi01Gene53497.t1	Aspi01Gene53497	component *(eS10) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0034.g025251	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.16	OrthoFinder output from all 47 species
Azfi_s0072.g037014	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Cba_g15143	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Cba_g24522	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Cba_g29488	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Cba_g59921	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.11G066500.1	Ceric.11G066500	component *(eS10) of small ribosomal-subunit (SSU)...	0.27	OrthoFinder output from all 47 species
Ceric.23G017600.1	Ceric.23G017600	component *(eS10) of small ribosomal-subunit (SSU)...	0.3	OrthoFinder output from all 47 species
Ceric.26G002500.1	Ceric.26G002500	component *(eS10) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001164.5	No alias	40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica	0.29	OrthoFinder output from all 47 species
Cre09.g411100	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.21	OrthoFinder output from all 47 species
Dac_g00412	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Dac_g24156	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Dac_g26317	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g00384	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g23653	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Dcu_g50620	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Dde_g06974	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Dde_g06975	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01019409001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.25	OrthoFinder output from all 47 species
GSVIVT01028854001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.27	OrthoFinder output from all 47 species
Gb_10517	No alias	component RPS10 of SSU proteome	0.2	OrthoFinder output from all 47 species
Gb_10518	No alias	component RPS10 of SSU proteome	0.16	OrthoFinder output from all 47 species
LOC_Os01g73160.1	LOC_Os01g73160	component RPS10 of SSU proteome	0.22	OrthoFinder output from all 47 species
LOC_Os02g34460.2	LOC_Os02g34460	component RPS10 of SSU proteome	0.03	OrthoFinder output from all 47 species
LOC_Os04g35090.1	LOC_Os04g35090	component RPS10 of SSU proteome	0.26	OrthoFinder output from all 47 species
Lfl_g00341	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Lfl_g30568	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
MA_111018g0010	No alias	component RPS10 of SSU proteome	0.16	OrthoFinder output from all 47 species
MA_314020g0010	No alias	component RPS10 of SSU proteome	0.09	OrthoFinder output from all 47 species
Mp2g00580.1	No alias	component RPS10 of SSU proteome	0.35	OrthoFinder output from all 47 species
Msp_g16642	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.19	OrthoFinder output from all 47 species
Msp_g39895	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Nbi_g06541	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Nbi_g38614	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ore_g05443	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pir_g02146	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Pnu_g13545	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pp3c10_21170V3.1	Pp3c10_21170	RNA binding Plectin/S10 domain-containing protein	0.05	OrthoFinder output from all 47 species
Pp3c14_1810V3.1	Pp3c14_1810	RNA binding Plectin/S10 domain-containing protein	0.24	OrthoFinder output from all 47 species
Pp3c23_13100V3.1	Pp3c23_13100	RNA binding Plectin/S10 domain-containing protein	0.27	OrthoFinder output from all 47 species
Pp3c24_2340V3.1	Pp3c24_2340	RNA binding Plectin/S10 domain-containing protein	0.23	OrthoFinder output from all 47 species
Ppi_g01660	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g04174	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g07647	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g25015	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g25236	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007542	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Sam_g12896	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.2	OrthoFinder output from all 47 species
Sam_g14221	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Sam_g30478	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Sam_g31720	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g42638	No alias	lysine-rich arabinogalactan protein & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g46530	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Smo37555	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.21	OrthoFinder output from all 47 species
Solyc01g099670.3.1	Solyc01g099670	component RPS10 of SSU proteome	0.43	OrthoFinder output from all 47 species
Solyc12g096540.2.1	Solyc12g096540	component RPS10 of SSU proteome	0.41	OrthoFinder output from all 47 species
Spa_g13745	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Spa_g14505	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Spa_g21377	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.16	OrthoFinder output from all 47 species
Spa_g43220	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Tin_g02351	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Tin_g22537	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Tin_g35060	No alias	component *(eS10) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Zm00001e008107_P001	Zm00001e008107	component RPS10 of SSU proteome	0.28	OrthoFinder output from all 47 species
Zm00001e028280_P001	Zm00001e028280	component RPS10 of SSU proteome	0.28	OrthoFinder output from all 47 species
Zm00001e040881_P001	Zm00001e040881	component RPS10 of SSU proteome	0.28	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009664	plant-type cell wall organization	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	ISS	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042545	cell wall modification	RCA	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000461	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006405	RNA export from nucleus	IEP	HCCA
BP	GO:0006407	rRNA export from nucleus	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0010043	response to zinc ion	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031125	rRNA 3'-end processing	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042255	ribosome assembly	IEP	HCCA
BP	GO:0042256	cytosolic ribosome assembly	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0043628	regulatory ncRNA 3'-end processing	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0050657	nucleic acid transport	IEP	HCCA
BP	GO:0050658	RNA transport	IEP	HCCA
BP	GO:0051029	rRNA transport	IEP	HCCA
BP	GO:0051168	nuclear export	IEP	HCCA
BP	GO:0051236	establishment of RNA localization	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
BP	GO:0097064	ncRNA export from nucleus	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005326	S10_plectin_N	3	94

External Links

No external refs found!

AT4G25740

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation