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Description : Cleavage/polyadenylation specificity factor, 25kDa subunit
Gene families : OG0003646 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003646_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT4G25550 | |
| Cluster | HCCA: Cluster_137 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre10.g462700 | No alias | RNA processing.RNA 3-end polyadenylation.Cleavage Factor... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IPI | Interproscan |
| CC | GO:0005634 | nucleus | ISM | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004407 | histone deacetylase activity | IEP | HCCA |
| BP | GO:0006473 | protein acetylation | IEP | HCCA |
| BP | GO:0006475 | internal protein amino acid acetylation | IEP | HCCA |
| BP | GO:0006476 | protein deacetylation | IEP | HCCA |
| BP | GO:0006626 | protein targeting to mitochondrion | IEP | HCCA |
| BP | GO:0006839 | mitochondrial transport | IEP | HCCA |
| BP | GO:0009292 | horizontal gene transfer | IEP | HCCA |
| BP | GO:0009294 | DNA-mediated transformation | IEP | HCCA |
| BP | GO:0009405 | obsolete pathogenesis | IEP | HCCA |
| BP | GO:0009611 | response to wounding | IEP | HCCA |
| BP | GO:0009861 | jasmonic acid and ethylene-dependent systemic resistance | IEP | HCCA |
| BP | GO:0009890 | negative regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010558 | negative regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0016570 | histone modification | IEP | HCCA |
| BP | GO:0016573 | histone acetylation | IEP | HCCA |
| BP | GO:0016575 | histone deacetylation | IEP | HCCA |
| MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | HCCA |
| MF | GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | IEP | HCCA |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | HCCA |
| BP | GO:0018393 | internal peptidyl-lysine acetylation | IEP | HCCA |
| BP | GO:0018394 | peptidyl-lysine acetylation | IEP | HCCA |
| MF | GO:0019213 | deacetylase activity | IEP | HCCA |
| BP | GO:0031324 | negative regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031327 | negative regulation of cellular biosynthetic process | IEP | HCCA |
| MF | GO:0033558 | protein lysine deacetylase activity | IEP | HCCA |
| BP | GO:0035601 | protein deacylation | IEP | HCCA |
| BP | GO:0043543 | protein acylation | IEP | HCCA |
| BP | GO:0045892 | negative regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0045934 | negative regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0051172 | negative regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051253 | negative regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0070585 | protein localization to mitochondrion | IEP | HCCA |
| BP | GO:0072655 | establishment of protein localization to mitochondrion | IEP | HCCA |
| BP | GO:0098732 | macromolecule deacylation | IEP | HCCA |
| BP | GO:1902679 | negative regulation of RNA biosynthetic process | IEP | HCCA |
| BP | GO:1903507 | negative regulation of nucleic acid-templated transcription | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR016706 | Cleav_polyA_spec_factor_su5 | 6 | 193 |
| No external refs found! |