AT4G25240 (SKS1)

Aliases : SKS1

Description : SKU5 similar 1

Gene families : OG0000411 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000411_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G25240

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00085p00024720	SKU5,...	Enzyme classification.EC_1 oxidoreductases.EC_1.10...	0.04	OrthoFinder output from all 47 species
Adi_g059902	SKU5	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Ala_g04234	SKU5	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Als_g38691	sks5	EC_1.10 oxidoreductase acting on diphenol or related...	0.02	OrthoFinder output from all 47 species
Cba_g13636	sks5	EC_1.10 oxidoreductase acting on diphenol or related...	0.04	OrthoFinder output from all 47 species
Ceric.03G066500.1	SKU5, Ceric.03G066500	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Ceric.1Z124400.1	SKU5, Ceric.1Z124400	EC_1.10 oxidoreductase acting on diphenol or related...	0.05	OrthoFinder output from all 47 species
Dac_g21577	sks5	EC_1.10 oxidoreductase acting on diphenol or related...	0.04	OrthoFinder output from all 47 species
Dcu_g13483	sks4	EC_1.10 oxidoreductase acting on diphenol or related...	0.02	OrthoFinder output from all 47 species
Ehy_g12921	sks4	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
GSVIVT01016181001	SKU5	Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Len_g00683	SKU5	EC_1.10 oxidoreductase acting on diphenol or related...	0.02	OrthoFinder output from all 47 species
Len_g41387	sks5	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Len_g45890	sks4	EC_1.10 oxidoreductase acting on diphenol or related...	0.02	OrthoFinder output from all 47 species
Lfl_g25260	sks4	EC_1.10 oxidoreductase acting on diphenol or related...	0.02	OrthoFinder output from all 47 species
MA_10236360g0010	sks4	L-ascorbate oxidase homolog OS=Brassica napus...	0.05	OrthoFinder output from all 47 species
Msp_g14876	SKU5	EC_1.10 oxidoreductase acting on diphenol or related...	0.02	OrthoFinder output from all 47 species
Nbi_g05449	SKU5	EC_1.10 oxidoreductase acting on diphenol or related...	0.03	OrthoFinder output from all 47 species
Nbi_g12376	SKU5	EC_1.10 oxidoreductase acting on diphenol or related...	0.04	OrthoFinder output from all 47 species
Ore_g37964	SKS6	EC_1.10 oxidoreductase acting on diphenol or related...	0.02	OrthoFinder output from all 47 species
Tin_g10569	sks5	EC_1.10 oxidoreductase acTing on diphenol or related...	0.03	OrthoFinder output from all 47 species
Zm00001e004398_P001	SKU5, Zm00001e004398	Monocopper oxidase-like protein SKU5 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Zm00001e032729_P002	sks17, Zm00001e032729	L-ascorbate oxidase homolog OS=Nicotiana tabacum...	0.03	OrthoFinder output from all 47 species
Zm00001e036719_P001	SKU5, Zm00001e036719	Monocopper oxidase-like protein SKU5 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005886	plasma membrane	ISM	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	RCA	Interproscan
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
CC	GO:0030054	cell junction	None	Extended
CC	GO:0031225	obsolete anchored component of membrane	TAS	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0046658	obsolete anchored component of plasma membrane	IDA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0001872	(1->3)-beta-D-glucan binding	IEP	HCCA
BP	GO:0003002	regionalization	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003725	double-stranded RNA binding	IEP	HCCA
MF	GO:0003872	6-phosphofructokinase activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005945	6-phosphofructokinase complex	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006869	lipid transport	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0008443	phosphofructokinase activity	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009615	response to virus	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0009890	negative regulation of biosynthetic process	IEP	HCCA
BP	GO:0009894	regulation of catabolic process	IEP	HCCA
BP	GO:0009896	positive regulation of catabolic process	IEP	HCCA
BP	GO:0009954	proximal/distal pattern formation	IEP	HCCA
BP	GO:0010051	xylem and phloem pattern formation	IEP	HCCA
BP	GO:0010267	ta-siRNA processing	IEP	HCCA
BP	GO:0010305	leaf vascular tissue pattern formation	IEP	HCCA
CC	GO:0010445	nuclear dicing body	IEP	HCCA
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010589	leaf proximal/distal pattern formation	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0016441	post-transcriptional gene silencing	IEP	HCCA
CC	GO:0016604	nuclear body	IEP	HCCA
BP	GO:0017148	negative regulation of translation	IEP	HCCA
MF	GO:0019200	carbohydrate kinase activity	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
BP	GO:0031054	pre-miRNA processing	IEP	HCCA
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031329	regulation of cellular catabolic process	IEP	HCCA
BP	GO:0031331	positive regulation of cellular catabolic process	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034249	negative regulation of amide metabolic process	IEP	HCCA
BP	GO:0035194	RNA-mediated post-transcriptional gene silencing	IEP	HCCA
BP	GO:0035195	miRNA-mediated gene silencing	IEP	HCCA
BP	GO:0035196	miRNA processing	IEP	HCCA
MF	GO:0035198	miRNA binding	IEP	HCCA
BP	GO:0035279	miRNA-mediated gene silencing by mRNA destabilization	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0043487	regulation of RNA stability	IEP	HCCA
BP	GO:0043488	regulation of mRNA stability	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:0050779	RNA destabilization	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051248	negative regulation of protein metabolic process	IEP	HCCA
BP	GO:0051607	defense response to virus	IEP	HCCA
BP	GO:0061013	regulation of mRNA catabolic process	IEP	HCCA
BP	GO:0061014	positive regulation of mRNA catabolic process	IEP	HCCA
BP	GO:0061157	mRNA destabilization	IEP	HCCA
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0061980	regulatory RNA binding	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0070918	regulatory ncRNA processing	IEP	HCCA
BP	GO:0140546	defense response to symbiont	IEP	HCCA
BP	GO:1903311	regulation of mRNA metabolic process	IEP	HCCA
BP	GO:1903313	positive regulation of mRNA metabolic process	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011707	Cu-oxidase_N	35	148
IPR001117	Cu-oxidase_2nd	163	313
IPR011706	Cu-oxidase_C	412	534

External Links

No external refs found!

AT4G25240 (SKS1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation