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  5. AT4G24900

AT4G24900


Description : unknown protein; Has 119 Blast hits to 96 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).


Gene families : OG0007493 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007493_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G24900

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0237.g059611 No alias not classified & original description: CDS=56-1252 0.03 OrthoFinder output from all 47 species
GSVIVT01008547001 No alias TITAN-like protein OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Ppi_g56960 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e010123_P001 Zm00001e010123 TITAN-like protein OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0009793 embryo development ending in seed dormancy IMP Interproscan
BP GO:0009960 endosperm development IMP Interproscan
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Type GO Term Name Evidence Source
BP GO:0000280 nuclear division IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
BP GO:0006360 transcription by RNA polymerase I IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009086 methionine biosynthetic process IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016441 post-transcriptional gene silencing IEP HCCA
BP GO:0016926 protein desumoylation IEP HCCA
MF GO:0016929 deSUMOylase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034250 positive regulation of amide metabolic process IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
BP GO:0050665 hydrogen peroxide biosynthetic process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1903409 reactive oxygen species biosynthetic process IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR028015 CCDC84-like 12 391
No external refs found!