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AT4G22380


Description : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein


Gene families : OG0002183 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002183_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G22380
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Ala_g06081 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.04 OrthoFinder output from all 47 species
Als_g39727 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.03 OrthoFinder output from all 47 species
Aop_g04016 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.02 OrthoFinder output from all 47 species
Aop_g28215 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.04 OrthoFinder output from all 47 species
Cre06.g249250 No alias RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder output from all 47 species
Dcu_g19050 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.04 OrthoFinder output from all 47 species
GSVIVT01016438001 No alias RNA processing.RNA modification.rRNA/tRNA... 0.03 OrthoFinder output from all 47 species
LOC_Os03g13800.1 LOC_Os03g13800 protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.04 OrthoFinder output from all 47 species
LOC_Os10g03540.1 LOC_Os10g03540 protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.04 OrthoFinder output from all 47 species
Lfl_g21991 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.03 OrthoFinder output from all 47 species
MA_16906g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 OrthoFinder output from all 47 species
MA_433779g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 OrthoFinder output from all 47 species
Pp3c14_21860V3.1 Pp3c14_21860 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.02 OrthoFinder output from all 47 species
Pp3c17_18010V3.1 Pp3c17_18010 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.01 OrthoFinder output from all 47 species
Ppi_g04916 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.03 OrthoFinder output from all 47 species
Sam_g08742 No alias component *(Snu13) of snoRNP rRNA methylation complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e001004_P001 Zm00001e001004 protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.04 OrthoFinder output from all 47 species
Zm00001e038611_P002 Zm00001e038611 protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 22 111
No external refs found!