Gb_39649


Description : chromatin remodeling factor (Iswi)


Gene families : OG_01_0000082 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000082_tree ,
OG_02_0003200 (LandPlants) Phylogenetic Tree(s): OG_02_0003200_tree ,
OG_03_0004460 (SeedPlants) Phylogenetic Tree(s): OG_03_0004460_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_39649
Cluster HCCA: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00086p00165640 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
AT3G06010 ATCHR12 Homeotic gene regulator 0.02 Archaeplastida
Cpa|evm.model.tig00000545.10 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01012117001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.03 Archaeplastida
GSVIVT01017791001 No alias Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
GSVIVT01017821001 No alias No description available 0.03 Archaeplastida
GSVIVT01018218001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
LOC_Os01g27040.1 No alias chromatin remodeling factor (Iswi) 0.02 Archaeplastida
LOC_Os07g31450.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
Mp3g15030.1 No alias chromatin remodeling factor (Iswi) 0.01 Archaeplastida
Pp3c11_18940V3.1 No alias chromatin-remodeling protein 11 0.03 Archaeplastida
Pp3c13_14440V3.1 No alias transcription regulatory protein SNF2, putative 0.02 Archaeplastida
Pp3c21_10800V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Archaeplastida
Pp3c3_15820V3.1 No alias transcription regulatory protein SNF2, putative 0.02 Archaeplastida
Pp3c5_19940V3.1 No alias chromatin remodeling 5 0.02 Archaeplastida
Smo155996 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Smo440203 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Solyc01g067390.4.1 No alias chromatin remodeling factor (Iswi) 0.06 Archaeplastida
Solyc01g094800.4.1 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
Solyc06g065730.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
Zm00001e017643_P001 No alias chromatin remodeling factor (Iswi) 0.05 Archaeplastida
Zm00001e026331_P001 No alias chromatin remodeling factor (Iswi) 0.06 Archaeplastida
GSVIVT01017791001 No alias Chromatin organisation.chromatin remodeling... 0.03 LandPlants
LOC_Os01g27040.1 No alias chromatin remodeling factor (Iswi) 0.02 LandPlants
Pp3c11_18940V3.1 No alias chromatin-remodeling protein 11 0.02 LandPlants
Smo440203 No alias Chromatin organisation.chromatin remodeling... 0.03 LandPlants
Solyc01g067390.4.1 No alias chromatin remodeling factor (Iswi) 0.05 LandPlants
Zm00001e017643_P001 No alias chromatin remodeling factor (Iswi) 0.04 LandPlants
Zm00001e026331_P001 No alias chromatin remodeling factor (Iswi) 0.06 LandPlants
GSVIVT01017791001 No alias Chromatin organisation.chromatin remodeling... 0.03 SeedPlants
LOC_Os01g27040.1 No alias chromatin remodeling factor (Iswi) 0.02 SeedPlants
Solyc01g067390.4.1 No alias chromatin remodeling factor (Iswi) 0.05 SeedPlants
Zm00001e017643_P001 No alias chromatin remodeling factor (Iswi) 0.04 SeedPlants
Zm00001e026331_P001 No alias chromatin remodeling factor (Iswi) 0.05 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006338 chromatin remodeling IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
MF GO:0031491 nucleosome binding IEA Interproscan
BP GO:0043044 ATP-dependent chromatin remodeling IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR015195 SLIDE 910 1020
IPR000330 SNF2_dom 214 481
IPR001650 Helicase_C 504 616
IPR015194 ISWI_HAND-dom 765 851
No external refs found!