Gb_39649

Description : chromatin remodeling factor (Iswi)

Gene families : OG_01_0000082 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000082_tree ,
OG_02_0003200 (LandPlants) Phylogenetic Tree(s): OG_02_0003200_tree ,
OG_03_0004460 (SeedPlants) Phylogenetic Tree(s): OG_03_0004460_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_39649
Cluster	HCCA: Cluster_216

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00086p00165640	evm_27.TU.AmTr_v1...	Chromatin organisation.chromatin remodeling...	0.04	Archaeplastida
AT3G06010	ATCHR12	Homeotic gene regulator	0.02	Archaeplastida
Cpa\|evm.model.tig00000545.10	No alias	Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana	0.01	Archaeplastida
GSVIVT01012117001	No alias	RNA biosynthesis.transcriptional activation.PHD finger...	0.03	Archaeplastida
GSVIVT01017791001	No alias	Chromatin organisation.chromatin remodeling...	0.04	Archaeplastida
GSVIVT01017821001	No alias	No description available	0.03	Archaeplastida
GSVIVT01018218001	No alias	Chromatin organisation.chromatin remodeling...	0.03	Archaeplastida
LOC_Os01g27040.1	No alias	chromatin remodeling factor (Iswi)	0.02	Archaeplastida
LOC_Os07g31450.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.02	Archaeplastida
Mp3g15030.1	No alias	chromatin remodeling factor (Iswi)	0.01	Archaeplastida
Pp3c11_18940V3.1	No alias	chromatin-remodeling protein 11	0.03	Archaeplastida
Pp3c13_14440V3.1	No alias	transcription regulatory protein SNF2, putative	0.02	Archaeplastida
Pp3c21_10800V3.1	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.02	Archaeplastida
Pp3c3_15820V3.1	No alias	transcription regulatory protein SNF2, putative	0.02	Archaeplastida
Pp3c5_19940V3.1	No alias	chromatin remodeling 5	0.02	Archaeplastida
Smo155996	No alias	Chromatin organisation.chromatin remodeling...	0.03	Archaeplastida
Smo440203	No alias	Chromatin organisation.chromatin remodeling...	0.03	Archaeplastida
Solyc01g067390.4.1	No alias	chromatin remodeling factor (Iswi)	0.06	Archaeplastida
Solyc01g094800.4.1	No alias	chromatin remodeling factor (Snf2)	0.03	Archaeplastida
Solyc06g065730.3.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.02	Archaeplastida
Zm00001e017643_P001	No alias	chromatin remodeling factor (Iswi)	0.05	Archaeplastida
Zm00001e026331_P001	No alias	chromatin remodeling factor (Iswi)	0.06	Archaeplastida
GSVIVT01017791001	No alias	Chromatin organisation.chromatin remodeling...	0.03	LandPlants
LOC_Os01g27040.1	No alias	chromatin remodeling factor (Iswi)	0.02	LandPlants
Pp3c11_18940V3.1	No alias	chromatin-remodeling protein 11	0.02	LandPlants
Smo440203	No alias	Chromatin organisation.chromatin remodeling...	0.03	LandPlants
Solyc01g067390.4.1	No alias	chromatin remodeling factor (Iswi)	0.05	LandPlants
Zm00001e017643_P001	No alias	chromatin remodeling factor (Iswi)	0.04	LandPlants
Zm00001e026331_P001	No alias	chromatin remodeling factor (Iswi)	0.06	LandPlants
GSVIVT01017791001	No alias	Chromatin organisation.chromatin remodeling...	0.03	SeedPlants
LOC_Os01g27040.1	No alias	chromatin remodeling factor (Iswi)	0.02	SeedPlants
Solyc01g067390.4.1	No alias	chromatin remodeling factor (Iswi)	0.05	SeedPlants
Zm00001e017643_P001	No alias	chromatin remodeling factor (Iswi)	0.04	SeedPlants
Zm00001e026331_P001	No alias	chromatin remodeling factor (Iswi)	0.05	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003682	chromatin binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0031491	nucleosome binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043044	ATP-dependent chromatin remodeling	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR015195	SLIDE	910	1020
IPR000330	SNF2_dom	214	481
IPR001650	Helicase_C	504	616
IPR015194	ISWI_HAND-dom	765	851

External Links

No external refs found!

Gb_39649

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation