1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT4G18465

AT4G18465


Description : RNA helicase family protein


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G18465

Target Alias Description ECC score Gene Family Method Actions
Als_g01190 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15016 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g29988 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene32733.t2 Aspi01Gene32733 RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.03 OrthoFinder output from all 47 species
Cba_g13014 EMB3011 RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g13368 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g22478 EMB3011 RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g08449 No alias RNA helicase *(Prp22) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g22606 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25246 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g11370.1 LOC_Os01g11370 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
LOC_Os02g19860.1 LOC_Os02g19860 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
LOC_Os06g09280.1 LOC_Os06g09280 RNA helicase (Prp22) 0.04 OrthoFinder output from all 47 species
MA_8723931g0010 EMB3011 RNA helicase (Prp16) 0.03 OrthoFinder output from all 47 species
Mp4g16380.1 ESP3, EMB2733 RNA helicase (Prp2) 0.04 OrthoFinder output from all 47 species
Mp7g03460.1 EMB3011 RNA helicase (Prp16) 0.02 OrthoFinder output from all 47 species
Ore_g30533 No alias RNA helicase *(Prp22) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g18506 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g015040.4.1 Solyc05g015040 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
Solyc09g008120.4.1 Solyc09g008120 RNA helicase (Prp22) 0.03 OrthoFinder output from all 47 species
Tin_g02893 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016478_P002 Zm00001e016478 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Zm00001e036358_P005 Zm00001e036358 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003724 RNA helicase activity ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007020 microtubule nucleation IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010072 primary shoot apical meristem specification IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016441 post-transcriptional gene silencing IEP HCCA
BP GO:0016458 obsolete gene silencing IEP HCCA
BP GO:0016570 histone modification IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0030422 siRNA processing IEP HCCA
BP GO:0030865 cortical cytoskeleton organization IEP HCCA
BP GO:0031122 cytoplasmic microtubule organization IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
BP GO:0035196 miRNA processing IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043622 cortical microtubule organization IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
CC GO:0045298 tubulin complex IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0062197 cellular response to chemical stress IEP HCCA
BP GO:0070918 regulatory ncRNA processing IEP HCCA
BP GO:0071470 cellular response to osmotic stress IEP HCCA
BP GO:0071472 cellular response to salt stress IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
BP GO:0098542 defense response to other organism IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 459 546
IPR001650 Helicase_C 268 396
IPR011709 DEAD-box_helicase_OB_fold 606 684
No external refs found!