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AT4G18375


Description : RNA-binding KH domain-containing protein


Gene families : OG0000185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G18375

Target Alias Description ECC score Gene Family Method Actions
AT2G03110 No alias RNA binding;nucleic acid binding 0.04 OrthoFinder output from all 47 species
Adi_g016415 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g075813 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g100933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117114 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16566 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Als_g33155 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g61202 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene45216.t1 Aspi01Gene45216 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66970.t1 Aspi01Gene66970 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene68976.t1 Aspi01Gene68976 regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Azfi_s0280.g062273 No alias not classified & original description: CDS=315-2570 0.03 OrthoFinder output from all 47 species
Cba_g06665 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.25G027100.1 Ceric.25G027100 not classified & original description: pacid=50594480... 0.04 OrthoFinder output from all 47 species
Dcu_g01662 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03944 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g07805 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g04900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g10485 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g00630 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.03 OrthoFinder output from all 47 species
Pir_g10935 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g53383 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e010096_P002 Zm00001e010096 KH domain-containing protein HEN4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009640 photomorphogenesis IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 38 88
IPR004088 KH_dom_type_1 141 211
IPR004088 KH_dom_type_1 398 455
IPR004088 KH_dom_type_1 316 366
No external refs found!