AT4G16830

Description : Hyaluronan / mRNA binding family

Gene families : OG0000880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000880_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G16830

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00013p00244720	evm_27.TU.AmTr_v1...	RGG repeats nuclear RNA binding protein A (Fragment)...	0.02	OrthoFinder output from all 47 species
AMTR_s00111p00140620	evm_27.TU.AmTr_v1...	RGG repeats nuclear RNA binding protein A (Fragment)...	0.01	OrthoFinder output from all 47 species
Ore_g30654	No alias	regulatory protein *(RGG) of mRNA quality control &...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR006861	HABP4_PAIRBP1-bd	147	252
IPR019084	Stm1-like_N	1	71

External Links

No external refs found!