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AT4G14170


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0006286 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006286_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G14170
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AT1G09220 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 OrthoFinder output from all 47 species
AT1G33350 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 OrthoFinder output from all 47 species
AT5G56310 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 OrthoFinder output from all 47 species
GSVIVT01005196001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
GSVIVT01015318001 No alias Pentatricopeptide repeat-containing protein At1g77170,... 0.03 OrthoFinder output from all 47 species
GSVIVT01024493001 No alias Pentatricopeptide repeat-containing protein At4g39952,... 0.02 OrthoFinder output from all 47 species
GSVIVT01025389001 OTP82 Pentatricopeptide repeat-containing protein At5g48910... 0.01 OrthoFinder output from all 47 species
GSVIVT01035920001 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.03 OrthoFinder output from all 47 species
Gb_33068 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.01 OrthoFinder output from all 47 species
LOC_Os02g06880.1 LOC_Os02g06880 Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
LOC_Os02g53050.1 PDE247, CLB19,... RNA editing factor (CLB19) 0.02 OrthoFinder output from all 47 species
LOC_Os03g07330.1 LOC_Os03g07330 Pentatricopeptide repeat-containing protein At5g56310... 0.01 OrthoFinder output from all 47 species
LOC_Os05g01635.1 LOC_Os05g01635 Pentatricopeptide repeat-containing protein At3g51320... 0.03 OrthoFinder output from all 47 species
LOC_Os05g33920.1 LOC_Os05g33920 Pentatricopeptide repeat-containing protein At4g14170... 0.02 OrthoFinder output from all 47 species
MA_10248752g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.01 OrthoFinder output from all 47 species
Solyc02g080350.1.1 Solyc02g080350 Pentatricopeptide repeat-containing protein At1g77170,... 0.03 OrthoFinder output from all 47 species
Solyc02g094125.1.1 Solyc02g094125 Pentatricopeptide repeat-containing protein At5g56310... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006714 sesquiterpenoid metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009687 abscisic acid metabolic process IEP HCCA
BP GO:0009688 abscisic acid biosynthetic process IEP HCCA
BP GO:0016106 sesquiterpenoid biosynthetic process IEP HCCA
BP GO:0043288 apocarotenoid metabolic process IEP HCCA
BP GO:0043289 apocarotenoid biosynthetic process IEP HCCA
BP GO:0051026 chiasma assembly IEP HCCA
BP GO:1902644 tertiary alcohol metabolic process IEP HCCA
BP GO:1902645 tertiary alcohol biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 173 197
IPR002885 Pentatricopeptide_repeat 374 398
IPR002885 Pentatricopeptide_repeat 201 231
IPR002885 Pentatricopeptide_repeat 99 129
IPR002885 Pentatricopeptide_repeat 440 466
IPR002885 Pentatricopeptide_repeat 300 347
No external refs found!