AT4G13850 (GRP2, ATGRP2, GR-RBP2)

Aliases : GRP2, ATGRP2, GR-RBP2

Description : glycine-rich RNA-binding protein 2

Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G13850

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00012p00103290	evm_27.TU.AmTr_v1...	Organelle RRM domain-containing protein 2, mitochondrial...	0.06	OrthoFinder output from all 47 species
AMTR_s00013p00256900	GRP2, ATGRP2,...	RNA processing.organelle machineries.RNA...	0.03	OrthoFinder output from all 47 species
AMTR_s00030p00198740	CCR2, ATGRP7,...	Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
Adi_g006714	GR-RBP3	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g043489	GRP2, ATGRP2, GR-RBP2	RNA editing factor *(ORRM3) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g111293	CCR2, ATGRP7,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g08733	GR-RBP4, GRP4	RNA editing factor *(ORRM3) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g11662	No alias	RNA chaperone *(RZ1) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g22335	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g24232	GR-RBP4, GRP4	RNA editing factor *(ORRM3) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g27510	CCR2, ATGRP7,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g44798	GR-RBP3	RNA editing factor *(ORRM3) & original description: none	0.05	OrthoFinder output from all 47 species
Als_g44805	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g62580	No alias	RNA chaperone *(RZ1) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g06479	No alias	RNA chaperone *(RZ1) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g01126	CCR2, ATGRP7,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g01139	No alias	RNA chaperone *(RZ1) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g07242	GR-RBP4, GRP4	RNA editing factor *(ORRM3) & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g15096	GRP2, ATGRP2, GR-RBP2	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene18654.t1	GR-RBP3, Aspi01Gene18654	RNA editing factor *(ORRM3) & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0006.g009790	CCR2, ATGRP7,...	not classified & original description: CDS=136-657	0.04	OrthoFinder output from all 47 species
Azfi_s0062.g035257	GRP2, ATGRP2, GR-RBP2	not classified & original description: CDS=192-584	0.03	OrthoFinder output from all 47 species
Azfi_s0468.g072856	GR-RBP4, GRP4	not classified & original description: CDS=1-582	0.04	OrthoFinder output from all 47 species
Cba_g08805	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g10857	GRP2, ATGRP2, GR-RBP2	RNA editing factor *(ORRM3) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g10906	GRP2, ATGRP2, GR-RBP2	RNA editing factor *(ORRM3) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g67441	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.09G066000.1	Ceric.09G066000	RNA chaperone *(RZ1) & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.12G018200.1	Ceric.12G018200	RNA chaperone *(RZ1) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.1Z053200.1	ATRZ-1A, Ceric.1Z053200	RNA chaperone *(RZ1) & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.30G044500.1	Ceric.30G044500	RNA chaperone *(RZ1) & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.32G066700.1	GRP2, ATGRP2,...	not classified & original description: pacid=50597731...	0.03	OrthoFinder output from all 47 species
Ceric.34G070600.1	GR-RBP3, Ceric.34G070600	not classified & original description: pacid=50624018...	0.03	OrthoFinder output from all 47 species
Ceric.35G013300.1	GR-RBP3, Ceric.35G013300	RNA editing factor *(ORRM3) & original description:...	0.03	OrthoFinder output from all 47 species
Cre01.g032300	PAB2, PABP2, ATPAB2	No description available	0.02	OrthoFinder output from all 47 species
Dac_g02153	No alias	RNA chaperone *(RZ1) & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g09825	GR-RBP4, GRP4	not classified & original description: none	0.12	OrthoFinder output from all 47 species
Dac_g10484	GR-RBP4, GRP4	RNA editing factor *(ORRM3) & original description: none	0.09	OrthoFinder output from all 47 species
Dcu_g00500	CCR2, ATGRP7,...	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Dcu_g27810	GR-RBP4, GRP4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g40103	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g45667	GRP2, ATGRP2, GR-RBP2	RNA editing factor *(ORRM3) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g24810	GR-RBP3	RNA editing factor *(ORRM3) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01014553001	No alias	RNA processing.organelle machineries.RNA...	0.06	OrthoFinder output from all 47 species
Gb_07052	No alias	RNA editing factor (ORRM)	0.04	OrthoFinder output from all 47 species
Gb_40269	No alias	RNA chaperone (RZ1\|GR-RBP)	0.04	OrthoFinder output from all 47 species
Len_g07508	No alias	RNA chaperone *(RZ1) & original description: none	0.03	OrthoFinder output from all 47 species
Len_g11354	GR-RBP4, GRP4	RNA editing factor *(ORRM3) & original description: none	0.02	OrthoFinder output from all 47 species
Len_g21305	GR-RBP4, GRP4	RNA editing factor *(ORRM3) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g05878	GRP2, ATGRP2, GR-RBP2	RNA editing factor *(ORRM3) & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g25551	GRP2, ATGRP2, GR-RBP2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g29647	GR-RBP3	RNA editing factor *(ORRM3) & original description: none	0.03	OrthoFinder output from all 47 species
MA_10436424g0010	ATRZ-1A	RNA chaperone (RZ1\|GR-RBP)	0.03	OrthoFinder output from all 47 species
MA_77292g0010	No alias	RNA editing factor (ORRM)	0.03	OrthoFinder output from all 47 species
Mp1g21200.1	GRP2, ATGRP2, GR-RBP2	RNA editing factor (ORRM)	0.02	OrthoFinder output from all 47 species
Msp_g29443	GR-RBP3	RNA editing factor *(ORRM3) & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g46171	CCR1, GR-RBP8,...	RNA chaperone *(RZ1) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g32937	CCR2, ATGRP7,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g43423	CCR1, GR-RBP8,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g03416	No alias	RNA chaperone *(RZ1) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g04318	No alias	RNA chaperone *(RZ1) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g05753	CCR2, ATGRP7,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g05754	CCR2, ATGRP7,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c12_23410V3.1	GRP2, ATGRP2,...	glycine-rich RNA-binding protein 3	0.04	OrthoFinder output from all 47 species
Pp3c4_6610V3.1	GRP2, ATGRP2,...	glycine-rich RNA-binding protein 3	0.11	OrthoFinder output from all 47 species
Pp3c7_3360V3.1	CCR1, GR-RBP8,...	cold, circadian rhythm, and RNA binding 1	0.02	OrthoFinder output from all 47 species
Ppi_g52954	GRP2, ATGRP2, GR-RBP2	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g61530	GR-RBP3	RNA editing factor *(ORRM3) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g09618	No alias	RNA editing factor *(ORRM3) & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g14736	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g25482	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g38660	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g48373	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Smo140819	GRP2, ATGRP2, GR-RBP2	RNA processing.organelle machineries.RNA...	0.09	OrthoFinder output from all 47 species
Smo406315	GR-RBP4, GRP4	Glycine-rich RNA-binding protein 2, mitochondrial...	0.04	OrthoFinder output from all 47 species
Solyc01g104840.4.1	ATRZ-1A, Solyc01g104840	RNA chaperone (RZ1\|GR-RBP)	0.06	OrthoFinder output from all 47 species
Solyc10g051377.1.1	CCR2, ATGRP7,...	RNA chaperone (RZ1\|GR-RBP)	0.03	OrthoFinder output from all 47 species
Solyc10g081180.2.1	GR-RBP3, Solyc10g081180	RNA chaperone (RZ1\|GR-RBP). RNA editing factor (ORRM)	0.03	OrthoFinder output from all 47 species
Solyc10g083240.2.1	Solyc10g083240	Small RNA-binding protein 11, chloroplastic...	0.03	OrthoFinder output from all 47 species
Spa_g10567	GRP2, ATGRP2, GR-RBP2	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g12557	GRP2, ATGRP2, GR-RBP2	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g20439	GRP2, ATGRP2, GR-RBP2	RNA editing factor *(ORRM3) & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g22222	GRP2, ATGRP2, GR-RBP2	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g22687	CCR2, ATGRP7,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g00653	GR-RBP5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g04956	No alias	RNA chaperone *(RZ1) & original description: none	0.06	OrthoFinder output from all 47 species
Tin_g27808	GR-RBP4, GRP4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g30660	GR-RBP3	RNA ediTing factor *(ORRM3) & original description: none	0.09	OrthoFinder output from all 47 species
Zm00001e028481_P002	GRP2, ATGRP2,...	RNA chaperone (RZ1\|GR-RBP). RNA editing factor (ORRM)	0.11	OrthoFinder output from all 47 species
Zm00001e040294_P001	Zm00001e040294	RNA editing factor (ORRM)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0001072	transcription antitermination factor activity, RNA binding	IDA	Interproscan
BP	GO:0001101	response to acid chemical	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IDA	Interproscan
MF	GO:0003697	single-stranded DNA binding	IDA	Interproscan
MF	GO:0003723	RNA binding	IDA	Interproscan
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	IDA	Interproscan
MF	GO:0005524	ATP binding	IDA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	RCA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	IMP	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	IMP	Interproscan
BP	GO:0009409	response to cold	IGI	Interproscan
BP	GO:0009409	response to cold	IEP	Interproscan
BP	GO:0009414	response to water deprivation	IEP	Interproscan
BP	GO:0009415	response to water	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009631	cold acclimation	IMP	Interproscan
BP	GO:0009651	response to salt stress	IMP	Interproscan
BP	GO:0009845	seed germination	IMP	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031554	regulation of termination of DNA-templated transcription	None	Extended
BP	GO:0031564	transcription antitermination	IDA	Interproscan
BP	GO:0032501	multicellular organismal process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043244	regulation of protein-containing complex disassembly	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	HCCA
CC	GO:0005743	mitochondrial inner membrane	IEP	HCCA
CC	GO:0005758	mitochondrial intermembrane space	IEP	HCCA
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0005802	trans-Golgi network	IEP	HCCA
BP	GO:0006626	protein targeting to mitochondrion	IEP	HCCA
BP	GO:0006839	mitochondrial transport	IEP	HCCA
MF	GO:0008320	protein transmembrane transporter activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009853	photorespiration	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015450	protein-transporting ATPase activity	IEP	HCCA
CC	GO:0019866	organelle inner membrane	IEP	HCCA
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031970	organelle envelope lumen	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
CC	GO:0031984	organelle subcompartment	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0043094	cellular metabolic compound salvage	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
BP	GO:0070585	protein localization to mitochondrion	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA
MF	GO:0140318	protein transporter activity	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	37	107

External Links

No external refs found!

AT4G13850 (GRP2, ATGRP2, GR-RBP2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation