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AT4G13350 (NIG)


Aliases : NIG

Description : NSP (nuclear shuttle protein)-interacting GTPase


Gene families : OG0001644 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001644_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G13350
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g59850.1 ZIGA4, AGD14,... class IV ARF-GAP ARF-GTPase-activating protein 0.04 OrthoFinder output from all 47 species
Mp5g14170.1 NIG Probable ADP-ribosylation factor GTPase-activating... 0.03 OrthoFinder output from all 47 species
Ore_g30438 ZIGA4, AGD14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g38736 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g49556 NIG not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pp3c1_70V3.1 NIG, Pp3c1_70 ArfGap/RecO-like zinc finger domain-containing protein 0.01 OrthoFinder output from all 47 species
Solyc12g006990.2.1 NIG, Solyc12g006990 Probable ADP-ribosylation factor GTPase-activating... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IDA Interproscan
MF GO:0005525 GTP binding IDA Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0006913 nucleocytoplasmic transport IDA Interproscan
BP GO:0009615 response to virus IMP Interproscan
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Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0009736 cytokinin-activated signaling pathway IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010104 regulation of ethylene-activated signaling pathway IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0030968 endoplasmic reticulum unfolded protein response IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070297 regulation of phosphorelay signal transduction system IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR001164 ArfGAP_dom 13 125
No external refs found!