AT4G11060 (MTSSB)

Aliases : MTSSB

Description : mitochondrially targeted single-stranded DNA binding protein

Gene families : OG0003904 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003904_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G11060
Cluster	HCCA: Cluster_76

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00039p00044370	evm_27.TU.AmTr_v1...	Cell cycle.organelle machineries.DNA...	0.05	OrthoFinder output from all 47 species
Aev_g00691	MTSSB	ssDNA-binding protein *(SSB) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g32363	No alias	ssDNA-binding protein *(SSB) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0313.g064215	MTSSB	ssDNA-binding protein *(SSB) & original description: CDS=113-796	0.03	OrthoFinder output from all 47 species
GSVIVT01022737001	No alias	Cell cycle.organelle machineries.DNA...	0.09	OrthoFinder output from all 47 species
GSVIVT01031193001	MTSSB	Cell cycle.organelle machineries.DNA...	0.03	OrthoFinder output from all 47 species
MA_10427900g0020	MTSSB	ssDNA-binding protein (SSB)	0.07	OrthoFinder output from all 47 species
MA_10430009g0010	No alias	ssDNA-binding protein (SSB)	0.05	OrthoFinder output from all 47 species
Mp4g09850.1	No alias	ssDNA-binding protein (SSB)	0.05	OrthoFinder output from all 47 species
Solyc01g100080.3.1	MTSSB, Solyc01g100080	ssDNA-binding protein (SSB)	0.05	OrthoFinder output from all 47 species
Solyc12g038370.2.1	Solyc12g038370	ssDNA-binding protein (SSB)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003697	single-stranded DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006081	cellular aldehyde metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006089	lactate metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009438	methylglyoxal metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	RCA	Interproscan
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0042180	cellular ketone metabolic process	None	Extended
BP	GO:0042182	ketone catabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0046185	aldehyde catabolic process	None	Extended
BP	GO:0051596	methylglyoxal catabolic process	None	Extended
BP	GO:0061727	methylglyoxal catabolic process to lactate	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000175	3'-5'-exoribonuclease activity	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
MF	GO:0004532	exoribonuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009560	embryo sac egg cell differentiation	IEP	HCCA
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0016896	exoribonuclease activity, producing 5'-phosphomonoesters	IEP	HCCA
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	IEP	HCCA
BP	GO:0030154	cell differentiation	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0048869	cellular developmental process	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000424	Primosome_PriB/ssb	71	174

External Links

No external refs found!

AT4G11060 (MTSSB)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation