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  5. AT4G09110

AT4G09110


Description : RING/U-box superfamily protein


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G09110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00185200 ATL6,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00088p00040490 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT1G35330 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G35910 No alias RING/U-box superfamily protein 0.06 OrthoFinder output from all 47 species
AT3G10910 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G09120 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G10160 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G41400 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from all 47 species
AT5G58580 ATL63, TL63 TOXICOS EN LEVADURA 63 0.04 OrthoFinder output from all 47 species
Aev_g06976 XERICO E3 ubiquitin ligase *(BRH) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g19891 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g34169 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Als_g03725 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aop_g00464 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene12530.t1 Aspi01Gene12530 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene20280.t1 Aspi01Gene20280 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene23680.t1 Aspi01Gene23680 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene28289.t1 Aspi01Gene28289 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36586.t1 Aspi01Gene36586 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene37200.t1 Aspi01Gene37200 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene37205.t2 Aspi01Gene37205 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene43906.t1 Aspi01Gene43906 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene46827.t1 ATL2, TL2,... RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene46829.t2 Aspi01Gene46829 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.06 OrthoFinder output from all 47 species
Aspi01Gene48333.t1 RHA3A, Aspi01Gene48333 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65294.t1 Aspi01Gene65294 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene65867.t1 RHA3A, Aspi01Gene65867 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene66157.t1 Aspi01Gene66157 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene70737.t1 Aspi01Gene70737 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Azfi_s0048.g030554 No alias not classified & original description: CDS=1-690 0.03 OrthoFinder output from all 47 species
Azfi_s0099.g044133 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Cba_g75914 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ceric.01G113700.1 Ceric.01G113700 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Ceric.11G079100.1 Ceric.11G079100 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ceric.21G001200.1 Ceric.21G001200 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.07 OrthoFinder output from all 47 species
Ceric.26G043300.1 Ceric.26G043300 not classified & original description: pacid=50598941... 0.03 OrthoFinder output from all 47 species
Ceric.36G023100.1 Ceric.36G023100 not classified & original description: pacid=50568780... 0.02 OrthoFinder output from all 47 species
Cre11.g476250 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Dac_g37469 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dcu_g25638 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dcu_g42850 XERICO not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g09730 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07523 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ehy_g24499 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
GSVIVT01008754001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01009098001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01012015001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01012022001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 OrthoFinder output from all 47 species
GSVIVT01028038001 ATL2, TL2 Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
Gb_04301 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_14777 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Gb_14778 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Gb_15297 No alias RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
Gb_20666 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Gb_32878 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Gb_36232 No alias IDF1 iron uptake IRT1-ubiquitin ligase 0.02 OrthoFinder output from all 47 species
LOC_Os01g16120.1 RHA2A, LOC_Os01g16120 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os01g53500.1 LOC_Os01g53500 RING-H2 finger protein ATL68 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os01g60730.2 LOC_Os01g60730 RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os02g33720.1 LOC_Os02g33720 RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os02g58540.1 LOC_Os02g58540 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
LOC_Os03g05560.1 LOC_Os03g05560 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
LOC_Os03g28080.1 ATL3, LOC_Os03g28080 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os05g29710.1 LOC_Os05g29710 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os05g45060.1 LOC_Os05g45060 RING-H2 finger protein ATL68 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os06g16060.1 LOC_Os06g16060 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os06g34530.1 ATL43, LOC_Os06g34530 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os06g34620.1 LOC_Os06g34620 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
LOC_Os07g48680.1 LOC_Os07g48680 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os08g37760.1 ATL6, LOC_Os08g37760 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
LOC_Os10g42390.1 LOC_Os10g42390 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os11g02424.1 LOC_Os11g02424 RING-H2 finger protein ATL74 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os12g42530.1 RHA3B, LOC_Os12g42530 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os12g42540.1 LOC_Os12g42540 RING-H2 finger protein ATL70 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Len_g56978 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g57765 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
MA_10429091g0010 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_10436028g0010 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_13397g0010 No alias RING-H2 finger protein ATL73 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_144298g0010 ATL2, TL2 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_152783g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_201391g0010 BRH1 Probable E3 ubiquitin-protein ligase RHA1A... 0.03 OrthoFinder output from all 47 species
MA_223841g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_226198g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_31462g0010 No alias RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
MA_31736g0010 BRH1 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_462422g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_46635g0010 BRH1 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_78702g0010 ATL8 RING-H2 finger protein ATL74 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_8693914g0010 No alias RING-H2 finger protein ATL73 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
MA_9764263g0010 No alias RING-H2 finger protein ATL67 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Msp_g11890 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Msp_g35182 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Msp_g39033 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Msp_g42863 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g00299 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ore_g10560 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g28590 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pnu_g17382 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pnu_g18088 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pnu_g21587 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pnu_g30287 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pnu_g32058 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ppi_g61044 RHA3A RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002082 ATL8 not classified & original description: CDS=1-792 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008676 ATL4H not classified & original description: CDS=1-825 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008886 No alias not classified & original description: CDS=1-492 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017298 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Sam_g52337 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo101273 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
Smo137213 ATL5 Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
Solyc01g095810.3.1 Solyc01g095810 RING-H2-class E3 ligase 0.08 OrthoFinder output from all 47 species
Solyc01g100100.4.1 Solyc01g100100 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc01g109200.4.1 Solyc01g109200 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Solyc02g067700.1.1 ATL3, Solyc02g067700 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc02g083660.1.1 Solyc02g083660 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Solyc03g005490.4.1 Solyc03g005490 RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
Solyc03g083460.3.1 Solyc03g083460 RING-H2 finger protein ATL22 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc03g114090.1.1 Solyc03g114090 RING-H2-class E3 ligase 0.09 OrthoFinder output from all 47 species
Solyc03g114190.1.1 Solyc03g114190 RING-H2 finger protein ATL56 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc05g055140.1.1 Solyc05g055140 RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
Solyc06g150136.1.1 Solyc06g150136 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Solyc10g009487.1.1 Solyc10g009487 RING-H2 finger protein ATL20 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Solyc10g081780.3.1 Solyc10g081780 Putative RING-H2 finger protein ATL71 OS=Arabidopsis... 0.11 OrthoFinder output from all 47 species
Solyc10g081790.1.1 Solyc10g081790 RING-H2-class E3 ligase 0.07 OrthoFinder output from all 47 species
Solyc11g005320.1.1 Solyc11g005320 RING-H2-class E3 ligase 0.06 OrthoFinder output from all 47 species
Solyc12g087860.3.1 ATL6, Solyc12g087860 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Solyc12g094690.1.1 Solyc12g094690 RING-H2 finger protein ATL8 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Spa_g29342 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g30280 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Spa_g31385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g01893 No alias RING-H2-class ATL-subclass E3 ubiquiTin ligase &... 0.02 OrthoFinder output from all 47 species
Tin_g36820 ATL8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000398_P001 Zm00001e000398 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e007129_P001 Zm00001e007129 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e011901_P001 Zm00001e011901 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e015449_P001 Zm00001e015449 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e019779_P001 Zm00001e019779 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e022175_P001 Zm00001e022175 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Zm00001e023260_P001 Zm00001e023260 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Zm00001e030930_P001 ATL3, Zm00001e030930 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e031442_P001 Zm00001e031442 RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
Zm00001e034421_P001 ATL6, Zm00001e034421 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e035560_P001 ATL3, Zm00001e035560 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding ISS Interproscan
BP GO:0010043 response to zinc ion RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0005385 zinc ion transmembrane transporter activity IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
BP GO:0006829 zinc ion transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0009267 cellular response to starvation IEP HCCA
BP GO:0009411 response to UV IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
CC GO:0009705 plant-type vacuole membrane IEP HCCA
BP GO:0010048 vernalization response IEP HCCA
BP GO:0010106 cellular response to iron ion starvation IEP HCCA
BP GO:0010167 response to nitrate IEP HCCA
BP GO:0010299 detoxification of cobalt ion IEP HCCA
BP GO:0010312 detoxification of zinc ion IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015562 efflux transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0015706 nitrate transmembrane transport IEP HCCA
BP GO:0031667 response to nutrient levels IEP HCCA
BP GO:0031668 cellular response to extracellular stimulus IEP HCCA
BP GO:0031669 cellular response to nutrient levels IEP HCCA
BP GO:0042594 response to starvation IEP HCCA
BP GO:0043473 pigmentation IEP HCCA
BP GO:0043476 pigment accumulation IEP HCCA
BP GO:0043478 pigment accumulation in response to UV light IEP HCCA
BP GO:0043479 pigment accumulation in tissues in response to UV light IEP HCCA
BP GO:0043480 pigment accumulation in tissues IEP HCCA
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0048437 floral organ development IEP HCCA
BP GO:0048440 carpel development IEP HCCA
BP GO:0048481 plant ovule development IEP HCCA
BP GO:0048827 phyllome development IEP HCCA
BP GO:0061687 detoxification of inorganic compound IEP HCCA
BP GO:0071496 cellular response to external stimulus IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098661 inorganic anion transmembrane transport IEP HCCA
BP GO:0098754 detoxification IEP HCCA
BP GO:1902025 nitrate import IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 122 165
No external refs found!