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AT4G08940


Description : Ubiquitin carboxyl-terminal hydrolase family protein


Gene families : OG0001240 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001240_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G08940
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
Als_g00882 WTF1, AtWTF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29986 WTF1, AtWTF1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g15495 WTF1, AtWTF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g17771 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g01485 WTF1, AtWTF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12152 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g28294 WTF1, AtWTF1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01031655001 emb1692 Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Gb_41689 No alias Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
LOC_Os09g29760.1 LOC_Os09g29760 Protein WHATS THIS FACTOR 1 OS=Zea mays... 0.04 OrthoFinder output from all 47 species
Ore_g06540 WTF1, AtWTF1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012917 WTF1, AtWTF1 not classified & original description: CDS=1-1233 0.04 OrthoFinder output from all 47 species
Solyc01g079430.2.1 Solyc01g079430 Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Solyc04g074280.1.1 Solyc04g074280 Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species
Zm00001e026570_P001 WTF1, AtWTF1,... WTF1 plastidial RNA basal splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006979 response to oxidative stress IMP Interproscan
CC GO:0009507 chloroplast ISM Interproscan
BP GO:0015824 proline transport RCA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005834 heterotrimeric G-protein complex IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
CC GO:0035097 histone methyltransferase complex IEP HCCA
CC GO:0048188 Set1C/COMPASS complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1905360 GTPase complex IEP HCCA
InterPro domains Description Start Stop
IPR021099 PORR_domain 67 389
No external refs found!