1. Home
  2. Species
  3. Psilotum nudum
  4. Sequence
  5. Pnu_g30629

Pnu_g30629 (ATL43)


Aliases : ATL43

Description : RING-H2-class ATL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0002999 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002999_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g30629
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00027410 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.05 OrthoFinder output from all 47 species
AT2G20030 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G28890 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Aspi01Gene04019.t1 ATL43, Aspi01Gene04019 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ceric.35G063100.1 ATL43, Ceric.35G063100 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dde_g10160 ATL43 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
GSVIVT01015336001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
MA_35091g0010 No alias RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Pir_g49281 ATL43 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Solyc05g018310.1.1 Solyc05g018310 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc12g007320.1.1 Solyc12g007320 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e032612_P001 Zm00001e032612 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 66 109
No external refs found!