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  5. AT4G02840

AT4G02840


Description : Small nuclear ribonucleoprotein family protein


Gene families : OG0003223 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003223_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G02840

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00127560 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species
AT3G07590 No alias Small nuclear ribonucleoprotein family protein 0.05 OrthoFinder output from all 47 species
Als_g04085 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder output from all 47 species
Ceric.11G065500.1 Ceric.11G065500 component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.06 OrthoFinder output from all 47 species
Ceric.38G033800.1 Ceric.38G033800 component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000754.23 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.01 OrthoFinder output from all 47 species
Cre16.g665400 No alias RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.01 OrthoFinder output from all 47 species
Mp1g03900.1 No alias component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... 0.05 OrthoFinder output from all 47 species
Msp_g40348 No alias component *(Sm-D1) of U1/U2/U4/U5-associated Sm... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation RCA Interproscan
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005730 nucleolus IDA Interproscan
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex ISS Interproscan
CC GO:0005774 vacuolar membrane IDA Interproscan
CC GO:0016020 membrane IDA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 5 69
No external refs found!