AT4G02460 (PMS1)


Aliases : PMS1

Description : DNA mismatch repair protein, putative


Gene families : OG0005197 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005197_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G02460

Target Alias Description ECC score Gene Family Method Actions
Cba_g22496 PMS1 component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.02 OrthoFinder output from all 47 species
Ceric.21G086600.1 PMS1, Ceric.21G086600 component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.03 OrthoFinder output from all 47 species
Cre04.g227000 PMS1 DNA damage response.DNA repair mechanisms.mismatch... 0.03 OrthoFinder output from all 47 species
GSVIVT01027985001 PMS1 DNA damage response.DNA repair mechanisms.mismatch... 0.06 OrthoFinder output from all 47 species
Sam_g14037 No alias component *(PMS1) of MLH1-PMS1 heterodimer & original... 0.02 OrthoFinder output from all 47 species
Solyc09g074990.4.1 PMS1, Solyc09g074990 component PMS1 of MLH1-PMS1 heterodimer 0.08 OrthoFinder output from all 47 species
Zm00001e022851_P002 PMS1, Zm00001e022851 component PMS1 of MLH1-PMS1 heterodimer 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle RCA Interproscan
BP GO:0000724 double-strand break repair via homologous recombination RCA Interproscan
MF GO:0005524 ATP binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005634 nucleus IC Interproscan
BP GO:0006261 DNA-templated DNA replication RCA Interproscan
BP GO:0006275 regulation of DNA replication RCA Interproscan
BP GO:0006298 mismatch repair IMP Interproscan
BP GO:0006298 mismatch repair ISS Interproscan
BP GO:0006306 DNA methylation RCA Interproscan
BP GO:0006310 DNA recombination IMP Interproscan
BP GO:0006312 mitotic recombination RCA Interproscan
BP GO:0006355 regulation of DNA-templated transcription RCA Interproscan
BP GO:0007062 sister chromatid cohesion RCA Interproscan
BP GO:0007129 homologous chromosome pairing at meiosis RCA Interproscan
BP GO:0007131 reciprocal meiotic recombination IBA Interproscan
BP GO:0007131 reciprocal meiotic recombination RCA Interproscan
BP GO:0007140 male meiotic nuclear division RCA Interproscan
BP GO:0007267 cell-cell signaling RCA Interproscan
BP GO:0009555 pollen development IMP Interproscan
BP GO:0009555 pollen development RCA Interproscan
BP GO:0009560 embryo sac egg cell differentiation RCA Interproscan
BP GO:0009616 RNAi-mediated antiviral immune response RCA Interproscan
BP GO:0009640 photomorphogenesis RCA Interproscan
BP GO:0009691 cytokinin biosynthetic process RCA Interproscan
BP GO:0009793 embryo development ending in seed dormancy RCA Interproscan
BP GO:0009845 seed germination RCA Interproscan
BP GO:0009880 embryonic pattern specification RCA Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
BP GO:0009933 meristem structural organization RCA Interproscan
BP GO:0010050 vegetative phase change RCA Interproscan
BP GO:0010072 primary shoot apical meristem specification RCA Interproscan
BP GO:0010154 fruit development IMP Interproscan
BP GO:0010162 seed dormancy process RCA Interproscan
BP GO:0010182 sugar mediated signaling pathway RCA Interproscan
BP GO:0010228 vegetative to reproductive phase transition of meristem RCA Interproscan
BP GO:0010267 ta-siRNA processing RCA Interproscan
BP GO:0010431 seed maturation RCA Interproscan
BP GO:0010564 regulation of cell cycle process RCA Interproscan
BP GO:0016444 somatic cell DNA recombination RCA Interproscan
BP GO:0016567 protein ubiquitination RCA Interproscan
MF GO:0016887 ATP hydrolysis activity IBA Interproscan
BP GO:0019915 lipid storage RCA Interproscan
MF GO:0030983 mismatched DNA binding IBA Interproscan
BP GO:0031047 RNA-mediated gene silencing RCA Interproscan
CC GO:0032389 MutLalpha complex IBA Interproscan
BP GO:0035196 miRNA processing RCA Interproscan
BP GO:0043687 post-translational protein modification RCA Interproscan
BP GO:0045595 regulation of cell differentiation RCA Interproscan
BP GO:0045893 positive regulation of DNA-templated transcription RCA Interproscan
BP GO:0048316 seed development IMP Interproscan
BP GO:0048366 leaf development RCA Interproscan
BP GO:0048825 cotyledon development RCA Interproscan
BP GO:0050826 response to freezing RCA Interproscan
BP GO:0051301 cell division RCA Interproscan
BP GO:0051726 regulation of cell cycle RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0001558 regulation of cell growth IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004529 exodeoxyribonuclease activity IEP HCCA
MF GO:0004536 deoxyribonuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005819 spindle IEP HCCA
BP GO:0006287 base-excision repair, gap-filling IEP HCCA
BP GO:0006297 nucleotide-excision repair, DNA gap filling IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007276 gamete generation IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008296 3'-5'-exodeoxyribonuclease activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009561 megagametogenesis IEP HCCA
BP GO:0009799 specification of symmetry IEP HCCA
BP GO:0009855 determination of bilateral symmetry IEP HCCA
BP GO:0010016 shoot system morphogenesis IEP HCCA
BP GO:0010073 meristem maintenance IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016208 AMP binding IEP HCCA
BP GO:0016458 obsolete gene silencing IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016895 exodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022603 regulation of anatomical structure morphogenesis IEP HCCA
BP GO:0022604 regulation of cell morphogenesis IEP HCCA
BP GO:0031048 RNA-mediated heterochromatin formation IEP HCCA
CC GO:0031209 SCAR complex IEP HCCA
BP GO:0031507 heterochromatin formation IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032875 regulation of DNA endoreduplication IEP HCCA
BP GO:0032956 regulation of actin cytoskeleton organization IEP HCCA
BP GO:0032970 regulation of actin filament-based process IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0036292 DNA rewinding IEP HCCA
BP GO:0040008 regulation of growth IEP HCCA
BP GO:0040029 epigenetic regulation of gene expression IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
CC GO:0042575 DNA polymerase complex IEP HCCA
BP GO:0043137 DNA replication, removal of RNA primer IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
CC GO:0043625 delta DNA polymerase complex IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0045004 DNA replication proofreading IEP HCCA
BP GO:0045005 DNA-templated DNA replication maintenance of fidelity IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0045787 positive regulation of cell cycle IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0048439 flower morphogenesis IEP HCCA
BP GO:0048451 petal formation IEP HCCA
BP GO:0048453 sepal formation IEP HCCA
BP GO:0048638 regulation of developmental growth IEP HCCA
BP GO:0051125 regulation of actin nucleation IEP HCCA
BP GO:0051127 positive regulation of actin nucleation IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051302 regulation of cell division IEP HCCA
BP GO:0051493 regulation of cytoskeleton organization IEP HCCA
BP GO:0051495 positive regulation of cytoskeleton organization IEP HCCA
BP GO:0051510 regulation of unidimensional cell growth IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090329 regulation of DNA-templated DNA replication IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
BP GO:0110053 regulation of actin filament organization IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:0140718 facultative heterochromatin formation IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:1902903 regulation of supramolecular fiber organization IEP HCCA
BP GO:1902905 positive regulation of supramolecular fiber organization IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR014790 MutL_C 706 864
IPR013507 DNA_mismatch_S5_2-like 230 348
No external refs found!