AT4G02430 (SR34b, At-SR34b)

Aliases : SR34b, At-SR34b

Description : RNA-binding (RRM/RBD/RNP motifs) family protein

Gene families : OG0001059 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001059_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G02430

Target	Alias	Description	ECC score	Gene Family Method
Aop_g13216	SR30, ATSRP30, At-SR30	RNA splicing factor *(SR30/34) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.09G062100.1	SR30, ATSRP30,...	RNA splicing factor *(SR30/34) & original description:...	0.07	OrthoFinder output from all 47 species
Cre06.g278239	SR30, ATSRP30, At-SR30	RNA processing.RNA splicing.spliceosome-associated...	0.05	OrthoFinder output from all 47 species
Dcu_g36549	SR30, ATSRP30, At-SR30	RNA splicing factor *(SR30/34) & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g39694	At-SR34a, SR34a, SRp34a	RNA splicing factor *(SR30/34) & original description: none	0.03	OrthoFinder output from all 47 species
Len_g20957	SR30, ATSRP30, At-SR30	RNA splicing factor *(SR30/34) & original description: none	0.04	OrthoFinder output from all 47 species
MpVg00980.1	At-SR34a, SR34a, SRp34a	No annotation	0.03	OrthoFinder output from all 47 species
Pir_g08782	SR30, ATSRP30, At-SR30	RNA splicing factor *(SR30/34) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g29717	At-SR34, SRP34,...	RNA splicing factor *(SR30/34) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g18787	No alias	RNA splicing factor *(SR30/34) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc09g075090.1.1	At-SR34, SRP34,...	SR30/34 RNA splicing factor	0.04	OrthoFinder output from all 47 species
Tin_g00604	SR30, ATSRP30, At-SR30	RNA splicing factor *(SR30/34) & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010228	vegetative to reproductive phase transition of meristem	RCA	Interproscan
BP	GO:0016926	protein desumoylation	RCA	Interproscan
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042743	hydrogen peroxide metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0050665	hydrogen peroxide biosynthetic process	RCA	Interproscan
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072593	reactive oxygen species metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1903409	reactive oxygen species biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004712	protein serine/threonine/tyrosine kinase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	122	176
IPR000504	RRM_dom	9	75

External Links

No external refs found!

AT4G02430 (SR34b, At-SR34b)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation