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  5. AT4G02230

AT4G02230


Description : Ribosomal protein L19e family protein


Gene families : OG0001435 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001435_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G02230

Target Alias Description ECC score Gene Family Method Actions
Als_g06897 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aspi01Gene61028.t1 Aspi01Gene61028 component *(eL19) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g009570 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021181.1 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 47 species
Dcu_g23512 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ehy_g08158 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
LOC_Os03g21940.1 emb2386, LOC_Os03g21940 component RPL19 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Pp3c15_5130V3.1 Pp3c15_5130 Ribosomal protein L19e family protein 0.03 OrthoFinder output from all 47 species
Pp3c16_410V3.1 Pp3c16_410 Ribosomal protein L19e family protein 0.01 OrthoFinder output from all 47 species
Pp3c21_11230V3.1 Pp3c21_11230 Ribosomal protein L19e family protein 0.02 OrthoFinder output from all 47 species
Pp3c9_14720V3.1 Pp3c9_14720 Ribosomal protein L19e family protein 0.02 OrthoFinder output from all 47 species
Spa_g11536 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Tin_g03158 No alias component *(eL19) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005840 ribosome ISS Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0022625 cytosolic large ribosomal subunit IDA Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
BP GO:0042254 ribosome biogenesis ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009640 photomorphogenesis IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP HCCA
InterPro domains Description Start Stop
IPR000196 Ribosomal_L19/L19e 4 146
No external refs found!