1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT4G02075

AT4G02075 (PIT1)


Aliases : PIT1

Description : RING/FYVE/PHD zinc finger superfamily protein


Gene families : OG0000370 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G02075
Cluster HCCA: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
Adi_g115238 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g46783 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04052 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21088 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene03403.t1 Aspi01Gene03403 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene49653.t1 Aspi01Gene49653 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0022.g015936 No alias not classified & original description: CDS=1-798 0.04 OrthoFinder output from all 47 species
Cba_g68684 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.03G099300.1 Ceric.03G099300 E3 ubiquitin ligase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.11G023000.1 Ceric.11G023000 E3 ubiquitin ligase & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.11G062700.1 Ceric.11G062700 E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.16G007100.1 Ceric.16G007100 E3 ubiquitin ligase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.22G004900.1 Ceric.22G004900 E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.23G021200.1 Ceric.23G021200 E3 ubiquitin ligase & original description:... 0.04 OrthoFinder output from all 47 species
Cre17.g747747 No alias No description available 0.01 OrthoFinder output from all 47 species
Dde_g24961 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g00849 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g16213 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Gb_37740 No alias RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species
Len_g08617 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16331 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g34835 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g55963 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g28055 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g116030.4.1 Solyc03g116030 RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc04g007600.4.1 Solyc04g007600 RING-v-class E3 ligase 0.04 OrthoFinder output from all 47 species
Solyc06g069780.4.1 Solyc06g069780 RING-v-class E3 ligase 0.07 OrthoFinder output from all 47 species
Tin_g10556 No alias E3 ubiquiTin ligase & original description: none 0.08 OrthoFinder output from all 47 species
Zm00001e028572_P001 Zm00001e028572 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005319 lipid transporter activity IEP HCCA
MF GO:0005342 organic acid transmembrane transporter activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
MF GO:0008028 monocarboxylic acid transmembrane transporter activity IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008514 organic anion transmembrane transporter activity IEP HCCA
BP GO:0009624 response to nematode IEP HCCA
BP GO:0009832 plant-type cell wall biogenesis IEP HCCA
BP GO:0009834 plant-type secondary cell wall biogenesis IEP HCCA
BP GO:0010091 trichome branching IEP HCCA
BP GO:0010119 regulation of stomatal movement IEP HCCA
BP GO:0010410 hemicellulose metabolic process IEP HCCA
BP GO:0010413 glucuronoxylan metabolic process IEP HCCA
BP GO:0010417 glucuronoxylan biosynthetic process IEP HCCA
MF GO:0015020 glucuronosyltransferase activity IEP HCCA
MF GO:0015665 alcohol transmembrane transporter activity IEP HCCA
BP GO:0015711 organic anion transport IEP HCCA
BP GO:0015718 monocarboxylic acid transport IEP HCCA
BP GO:0015850 organic hydroxy compound transport IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
BP GO:0042743 hydrogen peroxide metabolic process IEP HCCA
BP GO:0042744 hydrogen peroxide catabolic process IEP HCCA
BP GO:0044038 cell wall macromolecule biosynthetic process IEP HCCA
BP GO:0045491 xylan metabolic process IEP HCCA
BP GO:0045492 xylan biosynthetic process IEP HCCA
BP GO:0046864 isoprenoid transport IEP HCCA
BP GO:0046865 terpenoid transport IEP HCCA
BP GO:0046942 carboxylic acid transport IEP HCCA
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP HCCA
BP GO:0070589 cellular component macromolecule biosynthetic process IEP HCCA
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0080168 abscisic acid transport IEP HCCA
MF GO:0090440 abscisic acid transmembrane transporter activity IEP HCCA
MF GO:1901618 organic hydroxy compound transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 20 65
IPR022143 DUF3675 72 176
No external refs found!