AT4G01880

Description : methyltransferases

Gene families : OG0006177 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006177_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G01880

Target	Alias	Description	ECC score	Gene Family Method	Actions
GSVIVT01028196001	No alias	RNA processing.RNA modification.rRNA/tRNA...	0.07	OrthoFinder output from all 47 species
Spa_g18029	No alias	tRNA adenosine-methyltransferase *(TRM13) & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007871	Methyltransferase_TRM13	167	445
IPR021721	Znf_CCCH-type_TRM13	7	34
IPR022776	TRM13/UPF0224_CHHC_Znf_dom	42	66

External Links

No external refs found!