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AT4G00200


Description : AT hook motif DNA-binding family protein


Gene families : OG0000263 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000263_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G00200
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
Adi_g057353 ATAHL1, AHL1 AHL clade-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g15731 No alias AHL clade-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene00212.t1 ATAHL1, AHL1,... AHL clade-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05187 No alias AHL clade-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g33579 No alias AHL clade-B transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14342 No alias AHL clade-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Mp8g14640.1 No alias AT-hook motif nuclear-localized protein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ppi_g12001 ATAHL1, AHL1 AHL clade-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g57591 No alias AHL clade-B transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000827 No alias AHL clade-B transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010139 No alias AHL clade-B transcription factor & original description:... 0.01 OrthoFinder output from all 47 species
Solyc08g077030.4.1 Solyc08g077030 AT-hook motif nuclear-localized protein 10... 0.03 OrthoFinder output from all 47 species
Spa_g13305 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005874 microtubule IEP HCCA
CC GO:0005876 spindle microtubule IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006261 DNA-templated DNA replication IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008283 cell population proliferation IEP HCCA
CC GO:0009524 phragmoplast IEP HCCA
BP GO:0009631 cold acclimation IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016444 somatic cell DNA recombination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0042732 D-xylose metabolic process IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0045003 double-strand break repair via synthesis-dependent strand annealing IEP HCCA
MF GO:0051011 microtubule minus-end binding IEP HCCA
CC GO:0099081 supramolecular polymer IEP HCCA
CC GO:0099512 supramolecular fiber IEP HCCA
CC GO:0099513 polymeric cytoskeletal fiber IEP HCCA
InterPro domains Description Start Stop
IPR005175 PPC_dom 124 238
No external refs found!