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  5. AT3G63460

AT3G63460


Description : transducin family protein / WD-40 repeat family protein


Gene families : OG0003227 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003227_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G63460
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00143180 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein II (COPII) coatomer... 0.11 OrthoFinder output from all 47 species
AMTR_s00111p00143660 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein II (COPII) coatomer... 0.04 OrthoFinder output from all 47 species
Adi_g011557 No alias scaffold component *(Sec31) of coat protein complex &... 0.05 OrthoFinder output from all 47 species
Adi_g057724 No alias scaffold component *(Sec31) of coat protein complex &... 0.06 OrthoFinder output from all 47 species
Aev_g07314 No alias scaffold component *(Sec31) of coat protein complex &... 0.03 OrthoFinder output from all 47 species
Ala_g22457 No alias scaffold component *(Sec31) of coat protein complex &... 0.1 OrthoFinder output from all 47 species
Als_g30686 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62026 No alias scaffold component *(Sec31) of coat protein complex &... 0.03 OrthoFinder output from all 47 species
Aob_g15456 No alias scaffold component *(Sec31) of coat protein complex &... 0.06 OrthoFinder output from all 47 species
Aop_g12879 No alias scaffold component *(Sec31) of coat protein complex &... 0.04 OrthoFinder output from all 47 species
Azfi_s0231.g059267 No alias scaffold component *(Sec31) of coat protein complex &... 0.05 OrthoFinder output from all 47 species
Cba_g13907 No alias scaffold component *(Sec31) of coat protein complex &... 0.03 OrthoFinder output from all 47 species
Cba_g56660 No alias scaffold component *(Sec31) of coat protein complex &... 0.03 OrthoFinder output from all 47 species
Ceric.02G027200.1 Ceric.02G027200 scaffold component *(Sec31) of coat protein complex &... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001154.3 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001154.4 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.03 OrthoFinder output from all 47 species
Cre12.g522450 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.07 OrthoFinder output from all 47 species
Dac_g21507 No alias scaffold component *(Sec31) of coat protein complex &... 0.05 OrthoFinder output from all 47 species
Dcu_g03156 No alias scaffold component *(Sec31) of coat protein complex &... 0.06 OrthoFinder output from all 47 species
Dde_g05955 No alias scaffold component *(Sec31) of coat protein complex &... 0.03 OrthoFinder output from all 47 species
Ehy_g21292 No alias scaffold component *(Sec31) of coat protein complex &... 0.04 OrthoFinder output from all 47 species
GSVIVT01001441001 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.16 OrthoFinder output from all 47 species
Gb_38895 No alias scaffolding component Sec31 of coat protein complex 0.15 OrthoFinder output from all 47 species
LOC_Os07g46370.1 LOC_Os07g46370 scaffolding component Sec31 of coat protein complex 0.07 OrthoFinder output from all 47 species
Len_g13782 No alias scaffold component *(Sec31) of coat protein complex &... 0.09 OrthoFinder output from all 47 species
Lfl_g04962 No alias scaffold component *(Sec31) of coat protein complex &... 0.12 OrthoFinder output from all 47 species
MA_10435529g0010 No alias scaffolding component Sec31 of coat protein complex 0.06 OrthoFinder output from all 47 species
MA_57417g0010 No alias scaffolding component Sec31 of coat protein complex 0.04 OrthoFinder output from all 47 species
Mp7g09730.1 No alias scaffolding component Sec31 of coat protein complex 0.1 OrthoFinder output from all 47 species
Msp_g15835 No alias scaffold component *(Sec31) of coat protein complex &... 0.08 OrthoFinder output from all 47 species
Nbi_g04454 No alias scaffold component *(Sec31) of coat protein complex &... 0.09 OrthoFinder output from all 47 species
Ore_g03111 No alias scaffold component *(Sec31) of coat protein complex &... 0.04 OrthoFinder output from all 47 species
Ore_g26748 No alias scaffold component *(Sec31) of coat protein complex &... 0.04 OrthoFinder output from all 47 species
Ore_g34792 No alias scaffold component *(Sec31) of coat protein complex &... 0.05 OrthoFinder output from all 47 species
Ore_g43593 No alias scaffold component *(Sec31) of coat protein complex &... 0.04 OrthoFinder output from all 47 species
Pir_g13045 No alias scaffold component *(Sec31) of coat protein complex &... 0.04 OrthoFinder output from all 47 species
Ppi_g32771 No alias scaffold component *(Sec31) of coat protein complex &... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016441 No alias scaffold component *(Sec31) of coat protein complex &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016966 No alias scaffold component *(Sec31) of coat protein complex &... 0.04 OrthoFinder output from all 47 species
Sam_g25577 No alias scaffold component *(Sec31) of coat protein complex &... 0.06 OrthoFinder output from all 47 species
Sam_g51160 No alias scaffold component *(Sec31) of coat protein complex &... 0.04 OrthoFinder output from all 47 species
Smo230767 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.04 OrthoFinder output from all 47 species
Solyc01g088020.3.1 Solyc01g088020 scaffolding component Sec31 of coat protein complex 0.16 OrthoFinder output from all 47 species
Spa_g11489 No alias scaffold component *(Sec31) of coat protein complex &... 0.1 OrthoFinder output from all 47 species
Tin_g14980 No alias scaffold component *(Sec31) of coat protein complex &... 0.06 OrthoFinder output from all 47 species
Zm00001e010894_P003 Zm00001e010894 scaffolding component Sec31 of coat protein complex 0.21 OrthoFinder output from all 47 species
Zm00001e035747_P003 Zm00001e035747 scaffolding component Sec31 of coat protein complex 0.22 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0006007 glucose catabolic process RCA Interproscan
BP GO:0006499 N-terminal protein myristoylation RCA Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
CC GO:0016020 membrane IDA Interproscan
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
CC GO:0000325 plant-type vacuole IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0000919 cell plate assembly IEP HCCA
BP GO:0001709 cell fate determination IEP HCCA
MF GO:0004888 transmembrane signaling receptor activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
CC GO:0005797 Golgi medial cisterna IEP HCCA
CC GO:0005801 cis-Golgi network IEP HCCA
CC GO:0005802 trans-Golgi network IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006409 tRNA export from nucleus IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006873 cellular monoatomic ion homeostasis IEP HCCA
BP GO:0006875 cellular metal ion homeostasis IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
MF GO:0008281 sulfonylurea receptor activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
CC GO:0009504 cell plate IEP HCCA
CC GO:0009524 phragmoplast IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009846 pollen germination IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010152 pollen maturation IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030003 cellular monoatomic cation homeostasis IEP HCCA
BP GO:0030007 cellular potassium ion homeostasis IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0030276 clathrin binding IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031982 vesicle IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
CC GO:0031985 Golgi cisterna IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
MF GO:0038023 signaling receptor activity IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048867 stem cell fate determination IEP HCCA
BP GO:0048878 chemical homeostasis IEP HCCA
BP GO:0050801 monoatomic ion homeostasis IEP HCCA
BP GO:0051031 tRNA transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0055065 metal ion homeostasis IEP HCCA
BP GO:0055075 potassium ion homeostasis IEP HCCA
BP GO:0055080 monoatomic cation homeostasis IEP HCCA
BP GO:0055082 cellular chemical homeostasis IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0080119 ER body organization IEP HCCA
BP GO:0097064 ncRNA export from nucleus IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:0098771 inorganic ion homeostasis IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 114 151
IPR009917 SRA1/Sec31 964 1101
IPR024298 ACE1_Sec16_Sec31 568 764
No external refs found!