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AT3G62330


Description : Zinc knuckle (CCHC-type) family protein


Gene families : OG0002612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G62330
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Adi_g024968 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g11969 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene47683.t1 Aspi01Gene47683 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g05115 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.07G063500.1 Ceric.07G063500 not classified & original description: pacid=50626237... 0.02 OrthoFinder output from all 47 species
MA_51020g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pir_g48933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g071950.3.1 Solyc11g071950 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
CC GO:0009295 nucleoid IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0009612 response to mechanical stimulus IEP HCCA
BP GO:0009648 photoperiodism IEP HCCA
BP GO:0009808 lignin metabolic process IEP HCCA
BP GO:0009809 lignin biosynthetic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016621 cinnamoyl-CoA reductase activity IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0019722 calcium-mediated signaling IEP HCCA
BP GO:0019932 second-messenger-mediated signaling IEP HCCA
MF GO:0030371 translation repressor activity IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0042127 regulation of cell population proliferation IEP HCCA
CC GO:0042644 chloroplast nucleoid IEP HCCA
CC GO:0042646 plastid nucleoid IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048573 photoperiodism, flowering IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA

No InterPro domains available for this sequence

No external refs found!