AT3G61340

Description : F-box and associated interaction domains-containing protein

Gene families : OG0001988 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001988_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G61340
Cluster	HCCA: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method
AT1G23037	No alias	F-box associated ubiquitination effector family protein	0.04	OrthoFinder output from all 47 species
AT1G30790	No alias	F-box and associated interaction domains-containing protein	0.08	OrthoFinder output from all 47 species
AT1G30920	No alias	F-box family protein	0.04	OrthoFinder output from all 47 species
AT1G30925	No alias	phospholipase Cs	0.08	OrthoFinder output from all 47 species
AT1G30930	No alias	F-box family protein	0.05	OrthoFinder output from all 47 species
AT1G31090	No alias	F-box family protein	0.06	OrthoFinder output from all 47 species
AT1G31163	No alias	F-box associated ubiquitination effector family protein	0.08	OrthoFinder output from all 47 species
AT1G31620	No alias	unknown protein; Has 9 Blast hits to 9 proteins in 2...	0.07	OrthoFinder output from all 47 species
AT1G32420	No alias	F-box and associated interaction domains-containing protein	0.05	OrthoFinder output from all 47 species
AT1G32660	No alias	F-box and associated interaction domains-containing protein	0.12	OrthoFinder output from all 47 species
AT1G33010	No alias	F-box and associated interaction domains-containing protein	0.08	OrthoFinder output from all 47 species
AT1G33020	No alias	F-box and associated interaction domains-containing protein	0.02	OrthoFinder output from all 47 species
AT1G46840	No alias	F-box family protein	0.1	OrthoFinder output from all 47 species
AT1G47765	No alias	F-box and associated interaction domains-containing protein	0.08	OrthoFinder output from all 47 species
AT1G47790	No alias	F-box and associated interaction domains-containing protein	0.02	OrthoFinder output from all 47 species
AT1G47810	No alias	F-box and associated interaction domains-containing protein	0.05	OrthoFinder output from all 47 species
AT1G50880	No alias	F-box and associated interaction domains-containing protein	0.11	OrthoFinder output from all 47 species
AT1G53360	No alias	F-box associated ubiquitination effector family protein	0.11	OrthoFinder output from all 47 species
AT1G53370	No alias	F-box and associated interaction domains-containing protein	0.1	OrthoFinder output from all 47 species
AT1G53815	No alias	F-box family protein	0.05	OrthoFinder output from all 47 species
AT1G55070	No alias	F-box and associated interaction domains-containing protein	0.06	OrthoFinder output from all 47 species
AT1G60370	No alias	F-box and associated interaction domains-containing protein	0.09	OrthoFinder output from all 47 species
AT1G61060	No alias	F-box family protein	0.07	OrthoFinder output from all 47 species
AT1G67130	No alias	F-box family protein	0.08	OrthoFinder output from all 47 species
AT2G02890	No alias	F-box family protein	0.05	OrthoFinder output from all 47 species
AT2G16220	No alias	F-box and associated interaction domains-containing protein	0.06	OrthoFinder output from all 47 species
AT2G16450	No alias	F-box and associated interaction domains-containing protein	0.08	OrthoFinder output from all 47 species
AT2G16810	No alias	F-box and associated interaction domains-containing protein	0.07	OrthoFinder output from all 47 species
AT2G23160	No alias	F-box family protein	0.11	OrthoFinder output from all 47 species
AT2G31470	DOR	F-box and associated interaction domains-containing protein	0.09	OrthoFinder output from all 47 species
AT2G32470	No alias	F-box associated ubiquitination effector family protein	0.11	OrthoFinder output from all 47 species
AT2G40910	No alias	F-box and associated interaction domains-containing protein	0.02	OrthoFinder output from all 47 species
AT3G10790	No alias	F-box associated ubiquitination effector family protein	0.04	OrthoFinder output from all 47 species
AT3G47150	No alias	F-box and associated interaction domains-containing protein	0.02	OrthoFinder output from all 47 species
AT3G49440	No alias	F-box associated ubiquitination effector family protein	0.02	OrthoFinder output from all 47 species
AT3G52320	No alias	F-box and associated interaction domains-containing protein	0.09	OrthoFinder output from all 47 species
AT3G57580	No alias	F-box and associated interaction domains-containing protein	0.04	OrthoFinder output from all 47 species
AT4G13060	No alias	F-box associated ubiquitination effector family protein	0.03	OrthoFinder output from all 47 species
AT4G19940	No alias	F-box and associated interaction domains-containing protein	0.06	OrthoFinder output from all 47 species
AT4G29970	No alias	F-box and associated interaction domains-containing protein	0.05	OrthoFinder output from all 47 species
AT5G15670	No alias	F-box family protein	0.02	OrthoFinder output from all 47 species
AT5G18160	No alias	F-box and associated interaction domains-containing protein	0.04	OrthoFinder output from all 47 species
AT5G22791	No alias	F-box family protein	0.06	OrthoFinder output from all 47 species
AT5G38810	No alias	F-box and associated interaction domains-containing protein	0.04	OrthoFinder output from all 47 species
AT5G42430	No alias	F-box and associated interaction domains-containing protein	0.08	OrthoFinder output from all 47 species
AT5G44345	No alias	F-box associated ubiquitination effector family protein	0.08	OrthoFinder output from all 47 species
AT5G50220	No alias	F-box family protein	0.04	OrthoFinder output from all 47 species
AT5G52610	No alias	F-box and associated interaction domains-containing protein	0.04	OrthoFinder output from all 47 species
AT5G62060	No alias	F-box and associated interaction domains-containing protein	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007059	chromosome segregation	RCA	Interproscan
BP	GO:0007129	homologous chromosome pairing at meiosis	RCA	Interproscan
BP	GO:0007131	reciprocal meiotic recombination	RCA	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
BP	GO:0042138	meiotic DNA double-strand break formation	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0061982	meiosis I cell cycle process	None	Extended
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140527	reciprocal homologous recombination	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	HCCA
MF	GO:0004484	mRNA guanylyltransferase activity	IEP	HCCA
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	HCCA
MF	GO:0008192	RNA guanylyltransferase activity	IEP	HCCA
BP	GO:0009452	7-methylguanosine RNA capping	IEP	HCCA
BP	GO:0010222	stem vascular tissue pattern formation	IEP	HCCA
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEP	HCCA
BP	GO:0032200	telomere organization	IEP	HCCA
BP	GO:0032204	regulation of telomere maintenance	IEP	HCCA
BP	GO:0032504	multicellular organism reproduction	IEP	HCCA
BP	GO:0036260	RNA capping	IEP	HCCA
BP	GO:0043247	telomere maintenance in response to DNA damage	IEP	HCCA
MF	GO:0070568	guanylyltransferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013187	F-box-assoc_dom_typ3	229	365
IPR001810	F-box_dom	22	59

External Links

No external refs found!

AT3G61340

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation