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  5. AT3G61170

AT3G61170


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G61170

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00076010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
AMTR_s00010p00113430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g18485... 0.01 OrthoFinder output from all 47 species
AMTR_s00078p00067180 EMB2261,... Pentatricopeptide repeat-containing protein At2g46050,... 0.01 OrthoFinder output from all 47 species
AT5G59600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G61400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g004402 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g032567 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087553 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g38141 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16431 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g18741 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24099 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g24621 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g27336 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g35613 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g36546 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18627.t1 Aspi01Gene18627 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31490.t1 Aspi01Gene31490 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene34702.t1 Aspi01Gene34702 ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene49181.t1 Aspi01Gene49181 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene63595.t1 EMB2261, Aspi01Gene63595 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene66052.t1 Aspi01Gene66052 ssDNA-binding protein *(OSB) & original description: none 0.08 OrthoFinder output from all 47 species
Aspi01Gene71401.t1 REME1, Aspi01Gene71401 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0012.g012909 No alias not classified & original description: CDS=1-2286 0.05 OrthoFinder output from all 47 species
Azfi_s0079.g038406 OTP86 not classified & original description: CDS=1-2394 0.02 OrthoFinder output from all 47 species
Azfi_s0768.g086029 No alias not classified & original description: CDS=1-2331 0.03 OrthoFinder output from all 47 species
Ceric.04G015100.1 Ceric.04G015100 not classified & original description: pacid=50632156... 0.02 OrthoFinder output from all 47 species
Ceric.04G051300.1 CRR22, Ceric.04G051300 ssDNA-binding protein *(OSB) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.05G026100.1 Ceric.05G026100 not classified & original description: pacid=50577264... 0.05 OrthoFinder output from all 47 species
Ceric.05G058700.1 Ceric.05G058700 not classified & original description: pacid=50578964... 0.03 OrthoFinder output from all 47 species
Ceric.06G003100.1 Ceric.06G003100 not classified & original description: pacid=50620504... 0.05 OrthoFinder output from all 47 species
Ceric.06G014300.1 Ceric.06G014300 not classified & original description: pacid=50620883... 0.11 OrthoFinder output from all 47 species
Ceric.13G010900.1 Ceric.13G010900 not classified & original description: pacid=50636623... 0.02 OrthoFinder output from all 47 species
Ceric.13G052000.1 Ceric.13G052000 not classified & original description: pacid=50635571... 0.08 OrthoFinder output from all 47 species
Ceric.1Z148400.1 Ceric.1Z148400 not classified & original description: pacid=50637111... 0.07 OrthoFinder output from all 47 species
Ceric.21G084300.1 OTP86, Ceric.21G084300 not classified & original description: pacid=50604215... 0.03 OrthoFinder output from all 47 species
Ceric.28G029300.1 Ceric.28G029300 not classified & original description: pacid=50569762... 0.04 OrthoFinder output from all 47 species
Ceric.28G044700.1 Ceric.28G044700 not classified & original description: pacid=50570014... 0.02 OrthoFinder output from all 47 species
Ceric.33G057300.1 Ceric.33G057300 not classified & original description: pacid=50607177... 0.03 OrthoFinder output from all 47 species
Dac_g19078 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g41962 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01021576001 BRCA1, ATBRCA1 DNA damage response.BRCA1–BARD1 DNA-damage response... 0.01 OrthoFinder output from all 47 species
Len_g03890 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18031 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g02471 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Msp_g13692 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g05094 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09779 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13583 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g15324 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g27565 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g60035 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63640 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g07356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008413 No alias not classified & original description: CDS=1-1578 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009681 No alias not classified & original description: CDS=1-2907 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012770 No alias not classified & original description: CDS=1-1605 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013956 No alias not classified & original description: CDS=1-2181 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015239 No alias not classified & original description: CDS=1-2529 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g015944 CRR22 not classified & original description: CDS=122-4345 0.02 OrthoFinder output from all 47 species
Sam_g12389 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13764 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g14049 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g37180 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39247 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g50428 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0002376 immune system process IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007154 cell communication IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0009607 response to biotic stimulus IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016441 post-transcriptional gene silencing IEP HCCA
BP GO:0016458 obsolete gene silencing IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016572 obsolete histone phosphorylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0023052 signaling IEP HCCA
BP GO:0030422 siRNA processing IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0031048 RNA-mediated heterochromatin formation IEP HCCA
BP GO:0031507 heterochromatin formation IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
BP GO:0035196 miRNA processing IEP HCCA
BP GO:0040029 epigenetic regulation of gene expression IEP HCCA
BP GO:0043207 response to external biotic stimulus IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0051707 response to other organism IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0070918 regulatory ncRNA processing IEP HCCA
BP GO:0098542 defense response to other organism IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:0140718 facultative heterochromatin formation IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 368 394
IPR002885 Pentatricopeptide_repeat 60 83
IPR002885 Pentatricopeptide_repeat 266 291
IPR002885 Pentatricopeptide_repeat 497 523
IPR002885 Pentatricopeptide_repeat 164 188
IPR002885 Pentatricopeptide_repeat 396 426
IPR002885 Pentatricopeptide_repeat 32 57
IPR002885 Pentatricopeptide_repeat 535 559
IPR002885 Pentatricopeptide_repeat 469 493
IPR002885 Pentatricopeptide_repeat 292 338
IPR002885 Pentatricopeptide_repeat 88 135
IPR002885 Pentatricopeptide_repeat 190 238
IPR032867 DYW_dom 633 737
No external refs found!