AT3G61110 (ARS27A, RS27A)

Aliases : ARS27A, RS27A

Description : ribosomal protein S27

Gene families : OG0001813 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001813_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G61110
Cluster	HCCA: Cluster_4

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00049p00194290	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	OrthoFinder output from all 47 species
Als_g39722	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aspi01Gene01804.t1	ARS27A, RS27A,...	component *(eS27) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aspi01Gene36661.t1	ARS27A, RS27A,...	component *(eS27) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0004.g008655	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Azfi_s0182.g056413	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cba_g12663	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Cba_g12664	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cba_g35394	No alias	component *(eS27) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ceric.05G019300.1	ARS27A, RS27A,...	component *(eS27) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Ceric.26G067400.1	ARS27A, RS27A,...	component *(eS27) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001299.2	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.14	OrthoFinder output from all 47 species
Cre02.g145250	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	OrthoFinder output from all 47 species
Cre12.g529400	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.12	OrthoFinder output from all 47 species
Dac_g00043	No alias	component *(eS27) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dac_g17983	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Dac_g40966	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g20815	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g35625	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Dcu_g35656	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.14	OrthoFinder output from all 47 species
Dde_g00057	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01001113001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.17	OrthoFinder output from all 47 species
GSVIVT01032964001	ARS27A, RS27A	Protein biosynthesis.cytosolic ribosome.small subunit...	0.1	OrthoFinder output from all 47 species
LOC_Os04g27860.1	LOC_Os04g27860	component RPS27 of SSU proteome	0.05	OrthoFinder output from all 47 species
Lfl_g15035	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
MA_54625g0010	ARS27A, RS27A	component RPS27 of SSU proteome	0.11	OrthoFinder output from all 47 species
MA_87055g0010	ARS27A, RS27A	component RPS27 of SSU proteome	0.05	OrthoFinder output from all 47 species
Mp5g09510.1	No alias	component RPS27 of SSU proteome	0.16	OrthoFinder output from all 47 species
Msp_g15674	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pp3c1_15840V3.1	Pp3c1_15840	ribosomal protein S27	0.16	OrthoFinder output from all 47 species
Pp3c21_21540V3.1	Pp3c21_21540	ribosomal protein S27	0.02	OrthoFinder output from all 47 species
Pp3c22_18310V3.1	ARS27A, RS27A,...	ribosomal protein S27	0.09	OrthoFinder output from all 47 species
Pp3c2_20540V3.1	ARS27A, RS27A,...	ribosomal protein S27	0.12	OrthoFinder output from all 47 species
Sam_g37791	No alias	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Smo163947	ARS27A, RS27A	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	OrthoFinder output from all 47 species
Solyc01g008080.3.1	ARS27A, RS27A,...	component RPS27 of SSU proteome	0.04	OrthoFinder output from all 47 species
Spa_g16488	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Spa_g53353	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Spa_g55045	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Spa_g57360	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Tin_g24199	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Zm00001e024704_P001	ARS27A, RS27A,...	component RPS27 of SSU proteome	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009664	plant-type cell wall organization	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
CC	GO:0030054	cell junction	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042254	ribosome biogenesis	ISS	Interproscan
BP	GO:0042545	cell wall modification	RCA	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000461	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016925	protein sumoylation	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031125	rRNA 3'-end processing	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
BP	GO:0043628	regulatory ncRNA 3'-end processing	IEP	HCCA
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000592	Ribosomal_S27	30	84

External Links

No external refs found!

AT3G61110 (ARS27A, RS27A)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation