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  5. AT3G60000

AT3G60000 (QWRF6)


Aliases : QWRF6

Description : Family of unknown function (DUF566)


Gene families : OG0000808 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000808_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G60000
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AT2G24070 QWRF4 Family of unknown function (DUF566) 0.02 OrthoFinder output from all 47 species
Aev_g48742 QWRF2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04896 QWRF8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_12272 QWRF2 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_12273 QWRF8 AUGMIN subunit 8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os09g11440.2 QWRF8, LOC_Os09g11440 Protein ENDOSPERM DEFECTIVE 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Pir_g22714 QWRF8 component *(AUG8) of Augmin gamma-TuRC recruiting... 0.04 OrthoFinder output from all 47 species
Zm00001e005120_P001 Zm00001e005120 Protein ENDOSPERM DEFECTIVE 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
CC GO:0000418 RNA polymerase IV complex IEP HCCA
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
MF GO:0003727 single-stranded RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004693 cyclin-dependent protein serine/threonine kinase activity IEP HCCA
CC GO:0005654 nucleoplasm IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
MF GO:0008187 poly-pyrimidine tract binding IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0008266 poly(U) RNA binding IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0009896 positive regulation of catabolic process IEP HCCA
BP GO:0010150 leaf senescence IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
BP GO:0010440 stomatal lineage progression IEP HCCA
BP GO:0010495 siRNA-mediated long-distance post-transcriptional gene silencing IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
BP GO:0017148 negative regulation of translation IEP HCCA
BP GO:0023052 signaling IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0031329 regulation of cellular catabolic process IEP HCCA
BP GO:0031331 positive regulation of cellular catabolic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034249 negative regulation of amide metabolic process IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
BP GO:0043487 regulation of RNA stability IEP HCCA
BP GO:0043488 regulation of mRNA stability IEP HCCA
BP GO:0050779 RNA destabilization IEP HCCA
BP GO:0051026 chiasma assembly IEP HCCA
BP GO:0051248 negative regulation of protein metabolic process IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
BP GO:0061013 regulation of mRNA catabolic process IEP HCCA
BP GO:0061014 positive regulation of mRNA catabolic process IEP HCCA
BP GO:0061157 mRNA destabilization IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0090625 siRNA-mediated gene silencing by mRNA destabilization IEP HCCA
BP GO:0090693 plant organ senescence IEP HCCA
MF GO:0097472 cyclin-dependent protein kinase activity IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0140766 siRNA-mediated gene silencing IEP HCCA
BP GO:1903311 regulation of mRNA metabolic process IEP HCCA
BP GO:1903313 positive regulation of mRNA metabolic process IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007573 QWRF 92 414
No external refs found!