1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT3G59540

AT3G59540


Description : Ribosomal L38e protein family


Gene families : OG0004541 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004541_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G59540

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0319.g064444 No alias component *(eL38) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Azfi_s0662.g081457 No alias component *(eL38) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Ceric.07G049300.1 Ceric.07G049300 component *(eL38) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.28G050900.1 Ceric.28G050900 component *(eL38) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.35G022100.1 Ceric.35G022100 component *(eL38) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.35G022200.1 Ceric.35G022200 component *(eL38) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ceric.35G022300.1 Ceric.35G022300 component *(eL38) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021719.6 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Cre07.g325746 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
Dac_g44338 No alias component *(eL38) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
GSVIVT01010854001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
GSVIVT01019051001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 OrthoFinder output from all 47 species
Gb_16529 No alias component RPL38 of LSU proteome component 0.07 OrthoFinder output from all 47 species
Gb_29252 No alias component RPL38 of LSU proteome component 0.1 OrthoFinder output from all 47 species
LOC_Os11g24610.1 LOC_Os11g24610 component RPL38 of LSU proteome component 0.1 OrthoFinder output from all 47 species
MA_20588g0010 No alias component RPL38 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Mp7g14520.1 No alias component RPL38 of LSU proteome component 0.25 OrthoFinder output from all 47 species
Pp3c10_20240V3.1 Pp3c10_20240 Ribosomal L38e protein family 0.07 OrthoFinder output from all 47 species
Pp3c12_17990V3.1 Pp3c12_17990 Ribosomal L38e protein family 0.03 OrthoFinder output from all 47 species
Pp3c4_11700V3.1 Pp3c4_11700 Ribosomal L38e protein family 0.05 OrthoFinder output from all 47 species
Sam_g20427 No alias component *(eL38) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Smo270247 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
Solyc05g055640.4.1 Solyc05g055640 component RPL38 of LSU proteome component 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation RCA Interproscan
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006412 translation ISS Interproscan
CC GO:0022625 cytosolic large ribosomal subunit IDA Interproscan
BP GO:0042254 ribosome biogenesis ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP HCCA
BP GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016925 protein sumoylation IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
CC GO:0022626 cytosolic ribosome IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031125 rRNA 3'-end processing IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0043628 regulatory ncRNA 3'-end processing IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP HCCA
InterPro domains Description Start Stop
IPR002675 Ribosomal_L38e 2 68
No external refs found!