AT3G58210

Description : TRAF-like family protein

Gene families : OG0007645 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007645_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G58210

Target	Alias	Description	ECC score	Gene Family Method
AT1G31370	No alias	Ubiquitin-specific protease family C19-related protein	0.01	OrthoFinder output from all 47 species
AT1G31380	No alias	TRAF-like family protein	0.04	OrthoFinder output from all 47 species
AT2G01790	No alias	TRAF-like family protein	0.01	OrthoFinder output from all 47 species
AT2G05410	No alias	TRAF-like family protein	0.03	OrthoFinder output from all 47 species
AT2G42455	No alias	No description available	0.05	OrthoFinder output from all 47 species
AT2G42460	No alias	TRAF-like family protein	0.02	OrthoFinder output from all 47 species
AT2G42465	No alias	No description available	0.05	OrthoFinder output from all 47 species
AT2G42470	No alias	TRAF-like family protein	0.03	OrthoFinder output from all 47 species
AT2G42475	No alias	No description available	0.04	OrthoFinder output from all 47 species
AT2G42480	No alias	TRAF-like family protein	0.04	OrthoFinder output from all 47 species
AT3G44805	No alias	TRAF-like superfamily protein	0.01	OrthoFinder output from all 47 species
AT3G58220	No alias	TRAF-like family protein	0.04	OrthoFinder output from all 47 species
AT3G58240	No alias	TRAF-like superfamily protein	0.04	OrthoFinder output from all 47 species
AT3G58260	No alias	TRAF-like family protein	0.03	OrthoFinder output from all 47 species
AT3G58280	No alias	Arabidopsis phospholipase-like protein (PEARLI 4) with...	0.03	OrthoFinder output from all 47 species
AT3G58290	No alias	TRAF-like superfamily protein	0.03	OrthoFinder output from all 47 species
AT3G58340	No alias	TRAF-like family protein	0.02	OrthoFinder output from all 47 species
AT3G58360	No alias	TRAF-like family protein	0.03	OrthoFinder output from all 47 species
AT3G58370	No alias	TRAF-like family protein	0.05	OrthoFinder output from all 47 species
AT3G58440	No alias	TRAF-like superfamily protein	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007059	chromosome segregation	RCA	Interproscan
BP	GO:0007062	sister chromatid cohesion	RCA	Interproscan
BP	GO:0007129	homologous chromosome pairing at meiosis	RCA	Interproscan
BP	GO:0007131	reciprocal meiotic recombination	RCA	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	RCA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
BP	GO:0042138	meiotic DNA double-strand break formation	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0045132	meiotic chromosome segregation	RCA	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0061982	meiosis I cell cycle process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
BP	GO:0098813	nuclear chromosome segregation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140527	reciprocal homologous recombination	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002083	MATH/TRAF_dom	13	134

External Links

No external refs found!

AT3G58210

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation