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AT3G56780


Description : FBD, F-box and Leucine Rich Repeat domains containing protein


Gene families : OG0004270 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004270_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G56780

Target Alias Description ECC score Gene Family Method Actions
AT1G19410 No alias FBD / Leucine Rich Repeat domains containing protein 0.02 OrthoFinder output from all 47 species
AT1G50980 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 OrthoFinder output from all 47 species
AT4G10400 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0000976 transcription cis-regulatory region binding IEP HCCA
MF GO:0000987 cis-regulatory region sequence-specific DNA binding IEP HCCA
MF GO:0001067 transcription regulatory region nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006266 DNA ligation IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0009734 auxin-activated signaling pathway IEP HCCA
BP GO:0010208 pollen wall assembly IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010260 obsolete animal organ senescence IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0010927 cellular component assembly involved in morphogenesis IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0032504 multicellular organism reproduction IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
BP GO:0048830 adventitious root development IEP HCCA
BP GO:0052386 cell wall thickening IEP HCCA
BP GO:0052543 callose deposition in cell wall IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR006566 FBD 395 422
IPR001810 F-box_dom 8 48
IPR013101 Leu-rich_rpt_2 153 177
IPR013101 Leu-rich_rpt_2 229 253
No external refs found!