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AT3G54780


Description : Zinc finger (C3HC4-type RING finger) family protein


Gene families : OG0000599 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000599_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G54780

Target Alias Description ECC score Gene Family Method Actions
AT1G08050 No alias Zinc finger (C3HC4-type RING finger) family protein 0.04 OrthoFinder output from all 47 species
AT2G22680 No alias Zinc finger (C3HC4-type RING finger) family protein 0.01 OrthoFinder output from all 47 species
Adi_g088080 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15196 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Aob_g04456 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene25613.t1 Aspi01Gene25613 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0064.g035638 No alias not classified & original description: CDS=1-2802 0.01 OrthoFinder output from all 47 species
Ceric.09G060200.1 Ceric.09G060200 not classified & original description: pacid=50588484... 0.03 OrthoFinder output from all 47 species
Ceric.24G014600.1 Ceric.24G014600 not classified & original description: pacid=50629291... 0.03 OrthoFinder output from all 47 species
Dcu_g04921 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g38041 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g49144 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Gb_01603 No alias ubiquitin protein ligase (WAV3) 0.02 OrthoFinder output from all 47 species
LOC_Os04g01160.1 LOC_Os04g01160 ubiquitin protein ligase (WAV3) 0.03 OrthoFinder output from all 47 species
LOC_Os08g03270.1 LOC_Os08g03270 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
LOC_Os10g32740.1 LOC_Os10g32740 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Len_g24093 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g15586 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g24649 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g28913 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007353 No alias not classified & original description: CDS=1-2007 0.03 OrthoFinder output from all 47 species
Sam_g38497 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc05g056140.4.1 Solyc05g056140 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e000344_P001 Zm00001e000344 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e004621_P001 Zm00001e004621 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Zm00001e008822_P002 Zm00001e008822 ubiquitin protein ligase (WAV3) 0.02 OrthoFinder output from all 47 species
Zm00001e012729_P001 Zm00001e012729 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e040514_P001 Zm00001e040514 ubiquitin protein ligase (WAV3) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
CC GO:0005886 plasma membrane ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002035 VWF_A 243 408
IPR032838 Vwaint_dom 577 649
IPR001841 Znf_RING 74 103
No external refs found!