AT3G53820

Description : C2H2 and C2HC zinc fingers superfamily protein

Gene families : OG0000096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000096_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G53820
Cluster	HCCA: Cluster_84

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00212840	ZFP4,...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	OrthoFinder output from all 47 species
AMTR_s00024p00186840	GIS,...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	OrthoFinder output from all 47 species
AMTR_s00036p00048090	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
AMTR_s00036p00048470	ZFP6,...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	OrthoFinder output from all 47 species
AMTR_s00057p00086480	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.06	OrthoFinder output from all 47 species
AMTR_s00079p00169240	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.06	OrthoFinder output from all 47 species
AMTR_s00088p00145510	ZFP5,...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.06	OrthoFinder output from all 47 species
AMTR_s00124p00105750	KNU,...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.05	OrthoFinder output from all 47 species
AMTR_s00138p00067840	ZFP7,...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	OrthoFinder output from all 47 species
AMTR_s00149p00097070	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.05	OrthoFinder output from all 47 species
AMTR_s00150p00049910	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	OrthoFinder output from all 47 species
AT1G68360	No alias	C2H2 and C2HC zinc fingers superfamily protein	0.05	OrthoFinder output from all 47 species
AT1G80730	ZFP1, ATZFP1	zinc-finger protein 1	0.07	OrthoFinder output from all 47 species
AT2G42410	ZFP11, ATZFP11	zinc finger protein 11	0.05	OrthoFinder output from all 47 species
AT3G09290	TAC1	telomerase activator1	0.04	OrthoFinder output from all 47 species
AT3G23130	SUP, FLO10, FON1	C2H2 and C2HC zinc fingers superfamily protein	0.04	OrthoFinder output from all 47 species
AT5G10970	No alias	C2H2 and C2HC zinc fingers superfamily protein	0.14	OrthoFinder output from all 47 species
AT5G14010	KNU	C2H2 and C2HC zinc fingers superfamily protein	0.04	OrthoFinder output from all 47 species
AT5G25160	ZFP3	zinc finger protein 3	0.06	OrthoFinder output from all 47 species
AT5G57520	ATZFP2, ZFP2	zinc finger protein 2	0.04	OrthoFinder output from all 47 species
Adi_g033743	RAB, RBE	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aev_g04136	No alias	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aev_g07088	No alias	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ala_g18616	No alias	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ala_g19396	ZFP8	C2H2 subclass ZFP transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ala_g22522	KNU	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Als_g00894	ZFP3	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aop_g44076	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g67881	JAG	transcriptional regulator *(JAG/NUB) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene03058.t1	ZFP10, ATZFP10,...	C2H2 subclass ZFP transcription factor & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene39580.t1	GIS2, Aspi01Gene39580	C2H2 subclass ZFP transcription factor & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene39584.t1	ZFP3, Aspi01Gene39584	C2H2 subclass ZFP transcription factor & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene39589.t1	KNU, Aspi01Gene39589	C2H2 subclass ZFP transcription factor & original...	0.06	OrthoFinder output from all 47 species
Aspi01Gene39590.t1	Aspi01Gene39590	C2H2 subclass ZFP transcription factor & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene51181.t1	KNU, Aspi01Gene51181	C2H2 subclass ZFP transcription factor & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene51183.t1	ZFP5, Aspi01Gene51183	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene53966.t1	RAB, RBE, Aspi01Gene53966	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene56786.t1	Aspi01Gene56786	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene61235.t1	Aspi01Gene61235	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene63795.t1	Aspi01Gene63795	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0034.g025408	RAB, RBE	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Cba_g01880	No alias	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Cba_g27550	ZFP6	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.05G076800.1	ZFP10, ATZFP10,...	not classified & original description: pacid=50577410...	0.03	OrthoFinder output from all 47 species
Ceric.05G076900.1	ZFP10, ATZFP10,...	not classified & original description: pacid=50579147...	0.03	OrthoFinder output from all 47 species
Ceric.1Z195100.1	ZFP10, ATZFP10,...	not classified & original description: pacid=50637475...	0.03	OrthoFinder output from all 47 species
Ceric.1Z195200.1	ZFP10, ATZFP10,...	not classified & original description: pacid=50637476...	0.03	OrthoFinder output from all 47 species
Ceric.32G009700.1	Ceric.32G009700	C2H2 subclass ZFP transcription factor & original...	0.06	OrthoFinder output from all 47 species
Dac_g15821	No alias	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dac_g24028	KNU	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dac_g38400	GIS2	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dcu_g10877	No alias	C2H2 subclass ZFP transcription factor & original...	0.04	OrthoFinder output from all 47 species
Dcu_g19018	No alias	C2H2 subclass ZFP transcription factor & original...	0.05	OrthoFinder output from all 47 species
Dde_g47144	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01011868001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.04	OrthoFinder output from all 47 species
GSVIVT01011890001	JAG	Zinc finger protein STAMENLESS 1 OS=Oryza sativa subsp. japonica	0.04	OrthoFinder output from all 47 species
GSVIVT01016493001	RAB, RBE	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.06	OrthoFinder output from all 47 species
GSVIVT01027720001	SUP, FLO10, FON1	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.05	OrthoFinder output from all 47 species
GSVIVT01031007001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.09	OrthoFinder output from all 47 species
Gb_04808	JGL, NUB	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Gb_12546	ZFP1, ATZFP1	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Gb_26860	ZFP8	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
LOC_Os01g04120.1	LOC_Os01g04120	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
LOC_Os01g32920.1	LOC_Os01g32920	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
LOC_Os04g50070.1	ZFP10, ATZFP10,...	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
LOC_Os05g20930.1	RAB, RBE, LOC_Os05g20930	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
LOC_Os07g01180.1	ZFP10, ATZFP10,...	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
LOC_Os07g23450.1	LOC_Os07g23450	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
LOC_Os09g26200.1	ZFP3, LOC_Os09g26200	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
LOC_Os09g26210.1	ATZFP2, ZFP2,...	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
LOC_Os09g27320.1	ZFP8, LOC_Os09g27320	C2H2 zinc finger transcription factor	0.07	OrthoFinder output from all 47 species
LOC_Os09g38610.1	ATZFP2, ZFP2,...	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
LOC_Os11g48000.1	ZFP10, ATZFP10,...	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
LOC_Os12g42250.1	LOC_Os12g42250	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Lfl_g23477	ATZFP2, ZFP2	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
MA_10430024g0010	No alias	C2H2 zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
MA_123573g0010	KNU	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
MA_2800g0010	No alias	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
MA_357706g0010	ZFP10, ATZFP10	C2H2 zinc finger transcription factor	0.06	OrthoFinder output from all 47 species
MA_424g0010	No alias	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
MA_54742g0010	ZFP6	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
MA_57615g0010	ZFP1, ATZFP1	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
MA_5999529g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Msp_g36746	RAB, RBE	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Nbi_g25220	ZFP8	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Nbi_g26286	ZFP3	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Nbi_g40971	RAB, RBE	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ore_g17154	No alias	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ore_g22987	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g34101	No alias	C2H2 subclass ZFP transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ore_g36250	RAB, RBE	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Pir_g18996	ZFP10, ATZFP10	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Pir_g38006	No alias	C2H2 subclass ZFP transcription factor & original...	0.05	OrthoFinder output from all 47 species
Pir_g45144	ZFP7	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Pir_g47303	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g10475	ZFP6	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ppi_g12483	JGL, NUB	transcriptional regulator *(JAG/NUB) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g33201	ZFP5	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ppi_g59122	ZFP5	C2H2 subclass ZFP transcription factor & original...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002709	ZFP1, ATZFP1	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Solyc03g117070.1.1	Solyc03g117070	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Solyc05g006310.3.1	ZFP5, Solyc05g006310	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Solyc05g009170.3.1	Solyc05g009170	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Solyc05g009180.1.1	Solyc05g009180	C2H2 zinc finger transcription factor	0.06	OrthoFinder output from all 47 species
Solyc09g011120.1.1	ZFP10, ATZFP10,...	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Solyc09g066250.1.1	Solyc09g066250	no hits & (original description: none)	0.09	OrthoFinder output from all 47 species
Solyc10g049870.1.1	ZFP7, Solyc10g049870	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Solyc10g084910.3.1	TAC1, Solyc10g084910	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
Solyc11g011890.2.1	ZFP4, Solyc11g011890	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
Spa_g03417	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g05801	GIS	C2H2 subclass ZFP transcription factor & original...	0.04	OrthoFinder output from all 47 species
Spa_g07897	ZFP1, ATZFP1	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Spa_g41345	SUP, FLO10, FON1	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Spa_g52372	ZFP1, ATZFP1	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Tin_g12220	ZFP10, ATZFP10	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Tin_g19895	ZFP10, ATZFP10	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Zm00001e005916_P001	Zm00001e005916	C2H2 zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
Zm00001e009854_P001	ATZFP2, ZFP2,...	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
Zm00001e011910_P001	Zm00001e011910	C2H2 zinc finger transcription factor	0.08	OrthoFinder output from all 47 species
Zm00001e012453_P001	ZFP1, ATZFP1,...	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Zm00001e016256_P001	Zm00001e016256	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
Zm00001e017009_P001	Zm00001e017009	C2H2 zinc finger transcription factor	0.06	OrthoFinder output from all 47 species
Zm00001e022212_P001	ZFP8, Zm00001e022212	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
Zm00001e025746_P001	Zm00001e025746	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
Zm00001e032639_P001	ZFP10, ATZFP10,...	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Zm00001e034883_P001	ATZFP2, ZFP2,...	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
Zm00001e035448_P001	ZFP7, Zm00001e035448	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
Zm00001e036816_P001	ZFP6, Zm00001e036816	C2H2 zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
Zm00001e037946_P001	ATZFP2, ZFP2,...	C2H2 zinc finger transcription factor	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004620	phospholipase activity	IEP	HCCA
MF	GO:0016298	lipase activity	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0045735	nutrient reservoir activity	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT3G53820

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation