AT3G53740

Description : Ribosomal protein L36e family protein

Gene families : OG0000800 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000800_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G53740
Cluster	HCCA: Cluster_4

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00012p00179170	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.22	OrthoFinder output from all 47 species
Adi_g012236	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Adi_g022992	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Adi_g067485	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Als_g30265	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Als_g37408	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aob_g05534	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aob_g15614	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g16043	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.19	OrthoFinder output from all 47 species
Aop_g32159	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Aspi01Gene34579.t1	Aspi01Gene34579	component *(eL36) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Azfi_s0049.g030800	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.21	OrthoFinder output from all 47 species
Azfi_s0383.g067431	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.17	OrthoFinder output from all 47 species
Cba_g03577	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g21382	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Cba_g23777	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g76479	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ceric.04G069000.1	Ceric.04G069000	component *(eL36) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Ceric.08G064600.1	Ceric.08G064600	component *(eL36) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021493.69	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.23	OrthoFinder output from all 47 species
Cre12.g484050	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.33	OrthoFinder output from all 47 species
Dac_g01113	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.16	OrthoFinder output from all 47 species
Dac_g25734	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Dcu_g17175	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.23	OrthoFinder output from all 47 species
Dcu_g27541	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ehy_g04197	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
GSVIVT01026914001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.27	OrthoFinder output from all 47 species
GSVIVT01028917001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.25	OrthoFinder output from all 47 species
Gb_10248	No alias	component RPL36 of LSU proteome component	0.15	OrthoFinder output from all 47 species
Gb_27261	No alias	component RPL36 of LSU proteome component	0.19	OrthoFinder output from all 47 species
LOC_Os01g62350.1	LOC_Os01g62350	component RPL36 of LSU proteome component	0.19	OrthoFinder output from all 47 species
LOC_Os05g38520.1	LOC_Os05g38520	component RPL36 of LSU proteome component	0.29	OrthoFinder output from all 47 species
Lfl_g17407	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g31817	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Lfl_g38888	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
MA_10430792g0010	No alias	component RPL36 of LSU proteome component	0.19	OrthoFinder output from all 47 species
MA_24782g0010	No alias	component RPL36 of LSU proteome component	0.13	OrthoFinder output from all 47 species
MA_69756g0010	No alias	component RPL36 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Mp1g05460.1	No alias	component RPL36 of LSU proteome component	0.16	OrthoFinder output from all 47 species
Msp_g00137	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Msp_g37785	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g39400	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Pir_g05044	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pir_g07917	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Pir_g33006	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pir_g56562	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Pp3c14_19960V3.1	Pp3c14_19960	Ribosomal protein L36e family protein	0.23	OrthoFinder output from all 47 species
Pp3c1_32310V3.1	Pp3c1_32310	Ribosomal protein L36e family protein	0.11	OrthoFinder output from all 47 species
Ppi_g25844	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Ppi_g33926	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g34019	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g38235	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004334	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g07231	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.2	OrthoFinder output from all 47 species
Sam_g20358	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g23315	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g23349	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g23436	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g23546	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g31192	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.2	OrthoFinder output from all 47 species
Sam_g37066	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g41738	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Sam_g45996	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g46575	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Sam_g48200	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g48487	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Smo267958	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.15	OrthoFinder output from all 47 species
Smo439710	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.2	OrthoFinder output from all 47 species
Solyc03g025520.4.1	Solyc03g025520	component RPL36 of LSU proteome component	0.14	OrthoFinder output from all 47 species
Solyc06g036050.4.1	Solyc06g036050	component RPL36 of LSU proteome component	0.1	OrthoFinder output from all 47 species
Spa_g03176	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Spa_g03177	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Spa_g42185	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Spa_g44897	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Tin_g41151	No alias	component *(eL36) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e027238_P001	Zm00001e027238	component RPL36 of LSU proteome component	0.29	OrthoFinder output from all 47 species
Zm00001e031832_P002	Zm00001e031832	component RPL36 of LSU proteome component	0.17	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0004550	nucleoside diphosphate kinase activity	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005758	mitochondrial intermembrane space	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
MF	GO:0008320	protein transmembrane transporter activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
MF	GO:0015450	protein-transporting ATPase activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	HCCA
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0031970	organelle envelope lumen	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140318	protein transporter activity	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000509	Ribosomal_L36e	8	92

External Links

No external refs found!

AT3G53740

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation