AT3G52580

Description : Ribosomal protein S11 family protein

Gene families : OG0001893 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001893_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G52580

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00040p00104960	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.3	OrthoFinder output from all 47 species
Adi_g015044	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Adi_g025760	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Ala_g00543	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.14	OrthoFinder output from all 47 species
Ala_g20351	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.2	OrthoFinder output from all 47 species
Als_g07705	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Als_g07706	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aop_g00922	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.3	OrthoFinder output from all 47 species
Aspi01Gene13443.t1	Aspi01Gene13443	component *(uS11) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aspi01Gene46905.t2	Aspi01Gene46905	component *(uS11) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0015.g013910	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.21	OrthoFinder output from all 47 species
Azfi_s0228.g059059	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.27	OrthoFinder output from all 47 species
Azfi_s0339.g065604	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.19	OrthoFinder output from all 47 species
Cba_g04340	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Cba_g06951	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.01G067700.1	Ceric.01G067700	component *(uS11) of small ribosomal-subunit (SSU)...	0.16	OrthoFinder output from all 47 species
Ceric.38G005500.1	Ceric.38G005500	component *(uS11) of small ribosomal-subunit (SSU)...	0.28	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001154.44	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.4	OrthoFinder output from all 47 species
Cre11.g480150	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
Dac_g08660	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.28	OrthoFinder output from all 47 species
Dcu_g06656	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g11136	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.18	OrthoFinder output from all 47 species
Dcu_g27158	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Dde_g26059	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ehy_g13001	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
GSVIVT01021436001	ATTRANS11, TRANS11	Protein biosynthesis.cytosolic ribosome.small subunit...	0.36	OrthoFinder output from all 47 species
GSVIVT01033877001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.32	OrthoFinder output from all 47 species
GSVIVT01036096001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.4	OrthoFinder output from all 47 species
Gb_17066	No alias	component RPS14 of SSU proteome	0.18	OrthoFinder output from all 47 species
Gb_17067	No alias	component RPS14 of SSU proteome	0.24	OrthoFinder output from all 47 species
LOC_Os02g06700.1	LOC_Os02g06700	component RPS14 of SSU proteome	0.17	OrthoFinder output from all 47 species
LOC_Os02g33140.1	LOC_Os02g33140	component RPS14 of SSU proteome	0.47	OrthoFinder output from all 47 species
Len_g04076	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Len_g18745	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g19558	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Lfl_g22212	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g25093	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
MA_113075g0010	No alias	component RPS14 of SSU proteome	0.05	OrthoFinder output from all 47 species
Mp8g03250.1	No alias	component RPS14 of SSU proteome	0.27	OrthoFinder output from all 47 species
Mp8g10900.1	No alias	component RPS14 of SSU proteome	0.46	OrthoFinder output from all 47 species
Msp_g02613	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Msp_g19753	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.18	OrthoFinder output from all 47 species
Msp_g36870	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Ore_g05916	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ore_g26083	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Ore_g36754	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pir_g09170	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pir_g61833	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pp3c15_22240V3.1	Pp3c15_22240	Ribosomal protein S11 family protein	0.2	OrthoFinder output from all 47 species
Pp3c9_21480V3.1	Pp3c9_21480	Ribosomal protein S11 family protein	0.11	OrthoFinder output from all 47 species
Ppi_g18225	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g60676	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007107	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g17417	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Sam_g35851	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.27	OrthoFinder output from all 47 species
Smo183051	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.25	OrthoFinder output from all 47 species
Solyc02g070570.4.1	Solyc02g070570	component RPS14 of SSU proteome	0.04	OrthoFinder output from all 47 species
Solyc09g010100.3.1	Solyc09g010100	component RPS14 of SSU proteome	0.41	OrthoFinder output from all 47 species
Solyc10g083280.4.1	Solyc10g083280	component RPS14 of SSU proteome	0.48	OrthoFinder output from all 47 species
Spa_g10828	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.28	OrthoFinder output from all 47 species
Spa_g11705	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.26	OrthoFinder output from all 47 species
Spa_g42532	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Spa_g51819	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.31	OrthoFinder output from all 47 species
Tin_g17077	No alias	component *(uS11) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Zm00001e022659_P002	Zm00001e022659	component RPS14 of SSU proteome	0.23	OrthoFinder output from all 47 species
Zm00001e030302_P001	Zm00001e030302	component RPS14 of SSU proteome	0.33	OrthoFinder output from all 47 species
Zm00001e030303_P001	Zm00001e030303	component RPS14 of SSU proteome	0.26	OrthoFinder output from all 47 species
Zm00001e030304_P001	Zm00001e030304	component RPS14 of SSU proteome	0.01	OrthoFinder output from all 47 species
Zm00001e037468_P002	Zm00001e037468	component RPS14 of SSU proteome	0.45	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009664	plant-type cell wall organization	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022627	cytosolic small ribosomal subunit	ISS	Interproscan
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042545	cell wall modification	RCA	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000461	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006407	rRNA export from nucleus	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009734	auxin-activated signaling pathway	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0010043	response to zinc ion	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031125	rRNA 3'-end processing	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042255	ribosome assembly	IEP	HCCA
BP	GO:0042256	cytosolic ribosome assembly	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043628	regulatory ncRNA 3'-end processing	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0048438	floral whorl development	IEP	HCCA
BP	GO:0048467	gynoecium development	IEP	HCCA
BP	GO:0051029	rRNA transport	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
BP	GO:0097064	ncRNA export from nucleus	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001971	Ribosomal_S11	28	146

External Links

No external refs found!

AT3G52580

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation