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  5. AT3G49970

AT3G49970


Description : Phototropic-responsive NPH3 family protein


Gene families : OG0000584 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000584_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G49970
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00144p00020600 evm_27.TU.AmTr_v1... BTB/POZ domain-containing protein SR1IP1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Adi_g051324 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
Ala_g18363 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03145 No alias substrate adaptor *(NCL/NCH) of CUL3-BTB E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Als_g22647 No alias substrate adaptor of CUL3-BTB E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Aob_g11100 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
Aspi01Gene28639.t1 Aspi01Gene28639 substrate adaptor *(NCL/NCH) of CUL3-BTB E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001664 No alias not classified & original description: CDS=1-2625 0.03 OrthoFinder output from all 47 species
Cba_g03271 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05247 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Ceric.26G037900.1 Ceric.26G037900 not classified & original description: pacid=50600061... 0.03 OrthoFinder output from all 47 species
Dac_g20411 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_00052 RPT2 Root phototropism protein 2 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_15614 No alias BTB/POZ domain-containing protein At1g03010... 0.03 OrthoFinder output from all 47 species
LOC_Os03g22600.1 LOC_Os03g22600 BTB/POZ domain-containing protein At1g03010... 0.05 OrthoFinder output from all 47 species
LOC_Os12g02540.1 LOC_Os12g02540 BTB/POZ domain-containing protein At3g08570... 0.03 OrthoFinder output from all 47 species
MA_10429476g0010 RPT2 BTB/POZ domain-containing protein SR1IP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g07382 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g01164 No alias substrate adaptor *(NCL/NCH) of CUL3-BTB E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
Nbi_g12476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17400 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo231529 No alias BTB/POZ domain-containing protein At5g48800... 0.02 OrthoFinder output from all 47 species
Solyc02g064720.3.1 Solyc02g064720 BTB/POZ domain-containing protein SR1IP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc09g061250.4.1 Solyc09g061250 BTB/POZ domain-containing protein At5g48800... 0.03 OrthoFinder output from all 47 species
Spa_g41434 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004871 obsolete signal transducer activity ISS Interproscan
CC GO:0005886 plasma membrane ISM Interproscan
BP GO:0009416 response to light stimulus ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000038 very long-chain fatty acid metabolic process IEP HCCA
BP GO:0001676 long-chain fatty acid metabolic process IEP HCCA
BP GO:0002213 defense response to insect IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0009593 detection of chemical stimulus IEP HCCA
BP GO:0009704 de-etiolation IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009720 detection of hormone stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009726 detection of endogenous stimulus IEP HCCA
BP GO:0009727 detection of ethylene stimulus IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0009740 gibberellic acid mediated signaling pathway IEP HCCA
BP GO:0009804 coumarin metabolic process IEP HCCA
BP GO:0009805 coumarin biosynthetic process IEP HCCA
MF GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity IEP HCCA
BP GO:0009911 positive regulation of flower development IEP HCCA
BP GO:0010017 red or far-red light signaling pathway IEP HCCA
BP GO:0010029 regulation of seed germination IEP HCCA
BP GO:0010030 positive regulation of seed germination IEP HCCA
BP GO:0010039 response to iron ion IEP HCCA
BP GO:0010476 gibberellin mediated signaling pathway IEP HCCA
MF GO:0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen IEP HCCA
BP GO:0031537 regulation of anthocyanin metabolic process IEP HCCA
BP GO:0031539 positive regulation of anthocyanin metabolic process IEP HCCA
BP GO:0042761 very long-chain fatty acid biosynthetic process IEP HCCA
BP GO:0045927 positive regulation of growth IEP HCCA
BP GO:0046620 regulation of organ growth IEP HCCA
BP GO:0046622 positive regulation of organ growth IEP HCCA
MF GO:0046910 pectinesterase inhibitor activity IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048582 positive regulation of post-embryonic development IEP HCCA
BP GO:0048639 positive regulation of developmental growth IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0051094 positive regulation of developmental process IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051240 positive regulation of multicellular organismal process IEP HCCA
BP GO:0071241 cellular response to inorganic substance IEP HCCA
BP GO:0071248 cellular response to metal ion IEP HCCA
BP GO:0071281 cellular response to iron ion IEP HCCA
BP GO:0071310 cellular response to organic substance IEP HCCA
BP GO:0071396 cellular response to lipid IEP HCCA
BP GO:0071398 cellular response to fatty acid IEP HCCA
BP GO:0071478 cellular response to radiation IEP HCCA
BP GO:0071482 cellular response to light stimulus IEP HCCA
BP GO:0071489 cellular response to red or far red light IEP HCCA
BP GO:0071731 response to nitric oxide IEP HCCA
BP GO:0071732 cellular response to nitric oxide IEP HCCA
BP GO:1900140 regulation of seedling development IEP HCCA
BP GO:1901699 cellular response to nitrogen compound IEP HCCA
BP GO:1902170 cellular response to reactive nitrogen species IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000243 positive regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR027356 NPH3_dom 149 394
IPR000210 BTB/POZ_dom 3 80
No external refs found!